Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00661 ATGTTTAAATTCAGTAAGAGAAAAAGGTTTTCATTAAACTCACCTGCTTCCTCTTACTTTTCTCTCCCTTTATATCTTCTCATCACTCTCAATCCAAAATCACTCACTTCCATTTTCAGTATCATCATCATCATCGTCGTCATGGTGCAAACAAGGAAGTTCCGAGGTGTCAGACAGCGCCATTGGGGTTCTTGGGTATCGGAAATTCGCCACCCACTTCTCAAAAGGAGGGTGTGGCTGGGTACGTTTGAAACAGCAGAAGAAGCAGCACGAGCATACGATCAAGCTGCGATTCTGATGAGTGGACGAAACGCAAAAACGAATTTTCCAATGCTTCAAACACCAGAGGGTGACCCAAAGACGCTAACAGCCACGCACGAAACCCCATCAACCTCAAAGGAACTGGAAGAGATTCTTCACGCAAAGCTTCGAAAGTGTGGGAAGCTTCCTTCACCTTCCATGACTTGCTTGAGACTGGACCCAGAGAACTCCCACATCGGCGTGTGGCAGAAGCGCGCCGGTCACTGTTCTGACTCCAACTGGGTAATGATGGTTCCCTTTGGAAAGAAGGGTGATGAAGGTGGAAACAGTTCTACGAGTGGTGCTTCGTTTGATTCGTTTTCTGAGTGTGATCAGACGGTGCAAGTTAGACGACAGGAACATGTGAGAACAGAGATGGACGAGGAAGAGAGAATCGCTATGCAGATGATAGAAGAACTCCTCAGCAGAAACTGGCCCACTAGCCCTTCTTCGTGTAATAATAACATCTGTTAA 774 0.4651 MFKFSKRKRFSLNSPASSYFSLPLYLLITLNPKSLTSIFSIIIIIVVMVQTRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPMLQTPEGDPKTLTATHETPSTSKELEEILHAKLRKCGKLPSPSMTCLRLDPENSHIGVWQKRAGHCSDSNWVMMVPFGKKGDEGGNSSTSGASFDSFSECDQTVQVRRQEHVRTEMDEEERIAMQMIEELLSRNWPTSPSSCNNNIC 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00661 257 SUPERFAMILY DNA-binding domain 53 111 IPR016177 GO:0003677
Vian4g00661 257 CDD AP2 53 110 IPR001471 GO:0003700|GO:0006355
Vian4g00661 257 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Vian4g00661 257 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Vian4g00661 257 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Vian4g00661 257 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Vian4g00661 257 Gene3D AP2/ERF domain 52 112 IPR036955 GO:0003700|GO:0006355
Vian4g00661 257 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Vian4g00661 257 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 50 207 - -
Vian4g00661 257 Pfam AP2 domain 53 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00661 Vian-Chr4 7940789 7941661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00661 48 244 AP2-EREBP Transcription Factor Family AT1G15360 60.294 1.58e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian4g00661 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00661 - - gmx:100779921 327.405