LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g00641	ATGTCTTCCATGGCCTCCACCAACCGAGACGAATCCTCCGACAACGACAGCAACTGTTCCTCGGTAACCGCACCGGACTCCTCTCGCAGCTGGCTCAGCACCTTTAGCTTCCGCCGCGCCAACCGCACCTCCCTTTCCCTTTCCACCGCCGAGACCACCTCAAGGGCTGCATGCGAGGCCATTCGCCGCCTCCGCCTCCACACCGGCGCCATCGGCCTCGACCACTTCCGTCTGCTGCGGCGGCTCGGCAGCGGCGACATCGGGAACGTGTACCTCTGCCAGATACGGAACCCGGTGGTGGGGTTGCCGCAGTGCCTCTACGCCATGAAGGTGGTGGATAGAGAGGCGCTTGCCATACGGAAGAAGCTTCACCGAGCGGAGATGGAGAAGGAGATTCTGGCCATGATGGACCACCCCTTCTTGCCTACTCTATACGCTGCGTTTGATGCCTCTCATTACTCTTGCTTCGTCATGGACTTTTGCCCCGGTGGAGACCTGTTCTCCGCTCGCCAACGCCTCCCCGAAAAACGCTTTACCATCTCGTCAACTAAGTTTTATGCAGCGGAGACACTGGTGGCACTGGAGTATCTGCACATGAAGGGCATAGTGTACAGGGACTTGAAGCCGGAGAACGTGCTGGTGAGGGAGGACGGTCACATTATGCTATCGGATTTTGATCTGTGTCTGAGATGCGAGGTGGTTCCAAAGCTGTTGAGAAGCAAAACCAGATCAGAAGGCAGTGCGAAGACAAGAACATCATCATGTGCTGCACCCATGCAATCATGTTTCTCTGGCTCAAGCAAGAGAAAGAAGAAGGTGACAACAGTTATAAGGGAAAATGTGGAGGTGTGTGAGGTTGACACAGAGATGGTGGCAGAGCCCATCAATGCAAGGTCCAAGTCATTTGTGGGAACGCATGAGTACTTGGCACCCGAAGTGATTTCTGGGCAAGGACATGGTAGTGCAGTGGATTGGTGGACTTATGGGGTTTTCTTGTATGAAATGTTGTATGGGAAAACACCCTTCAAAGGTGAGAACAACGAAAAAACACTGACCAACATTCTGAAGCAGCCCTTCACTTTCCCTAGAATTGCAGTGAGTAGCAGCAGGGAGTATGAAGAGACGGCGAAGGTTCAAGACCTCATCAGCAAGCTCTTGGTGAAGAACCCAAAGAAGAGAATCGGGTGCTGCATGGGCTCGGTTGAGATCAAGCGGCACGAGTTCTTCAAGGGAGTCAACTGGGCTCTGATTAGATCAGTTAAACCACCTGATTTCCACGCTGATTTCAACAACATTAGGCGTAGAGTTTTGTTACAGAAACTAAGCAACAAAGACAAGGATCAACCCTTTCAGATCACTCACCATCGTTTTGACTACTTCTGA	1383	0.5242	MSSMASTNRDESSDNDSNCSSVTAPDSSRSWLSTFSFRRANRTSLSLSTAETTSRAACEAIRRLRLHTGAIGLDHFRLLRRLGSGDIGNVYLCQIRNPVVGLPQCLYAMKVVDREALAIRKKLHRAEMEKEILAMMDHPFLPTLYAAFDASHYSCFVMDFCPGGDLFSARQRLPEKRFTISSTKFYAAETLVALEYLHMKGIVYRDLKPENVLVREDGHIMLSDFDLCLRCEVVPKLLRSKTRSEGSAKTRTSSCAAPMQSCFSGSSKRKKKVTTVIRENVEVCEVDTEMVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTYGVFLYEMLYGKTPFKGENNEKTLTNILKQPFTFPRIAVSSSREYEETAKVQDLISKLLVKNPKKRIGCCMGSVEIKRHEFFKGVNWALIRSVKPPDFHADFNNIRRRVLLQKLSNKDKDQPFQITHHRFDYF	460

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vian4g00641	460	CDD	STKc_phototropin_like	74	423	-	-
Vian4g00641	460	SUPERFAMILY	Protein kinase-like (PK-like)	61	429	IPR011009	-
Vian4g00641	460	SMART	serkin_6	76	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vian4g00641	460	MobiDBLite	consensus disorder prediction	1	28	-	-
Vian4g00641	460	Gene3D	Transferase(Phosphotransferase) domain 1	161	230	-	-
Vian4g00641	460	Gene3D	Phosphorylase Kinase; domain 1	74	160	-	-
Vian4g00641	460	FunFam	protein kinase PINOID 2	74	160	-	-
Vian4g00641	460	PANTHER	FLIPPASE KINASE 1-RELATED	13	427	-	-
Vian4g00641	460	FunFam	serine/threonine-protein kinase D6PK-like	297	427	-	-
Vian4g00641	460	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	202	214	IPR008271	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g00641	Vian-Chr4	7711665	7713238	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian4g00641	14	460	AGC Kinase Gene Family	AT2G26700	54.789	0.0	529

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Vian4g00641		Pkinase	2e-31	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g00641	K08286		-	gmx:100787216	722.235

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