Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00625 ATGGCATCTCAAGCAGAACTTAGCATGGAGTACAAGCCCTACACCTATTCCACACTGCTGAAATCCTTTGCAGACCAAACTGATCAGACCTACAAGCTCGAAGACTTTCTTTCTCGCTTAGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTCCTCACCAACGCTGTGGATGCTTCAAGGCAGCAGCTACAGAACTTCAGATCAAACCAAGGTACAAGGCCAATTCTGGAAGAATTCATACCCATAAAGCATCCAAATTCTCAAGAAAGCACTGAGAAGGCATCAAACATATCAGACAAGGCGAGTTGGATGACATCAGCTCAGCTATGGAGCCAGGCAAGCGAAGGAACCAAACCAAAATCCACAATTACATCACCAAAAGAAAGTGCTGATACAGGGTTTAGCGTGAGCCCTAGGCTAGCCCTAGAACATAGGAATGGAGGAGCCTTTTTACCATTCTCAAAAGAAAGAAACTCATGCCAAGGAATAGGGGATCTTCCTGAGTTAGGCCTTGCCTGTTCTGAGAGTGAAATGGAGGTGAAGAAATGTGAAGAGACAGAGAAATGTTCTAAAAGGGAGAATTCAGGCAAAGGTGGGAGTTTTGAAGGGATTGTTGATCAGGGAAAAGTTGCTGCAATTGCAACCGAGGCACAAACAACTAACACTACAACCACCACAACTAACACTACTGGCCGGAAAGCAAGAAGGTGTTGGTCACCGGACTTGCACCGTCGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGTGGCCACCCCAAAACAGATTAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGACTTCACACTAGAAGACCCAGCCCAAGCCTACATGCAGGAGCACCAACACCACAACTTGTAGTCCTTGGAGGAATTTGGGTGCCACCGGAATATGCCACTGCTGCCGCACACTCCGATGGCACCAGCTTCTACAGCCCACATCCCACCTCACACGTGCCACCGCAACACTACTGTGCAGCCACCCCGATGTCTCAAGAGTTCTACAACTCAGCTCCGTCACTGCCGTTGCCACCACCACACGACCACACTCTCCACCACCATTTTCACATGTACAAGACAGCACCACACACCCAAAGCTCTCCAGAATCAGATGTTCGGAGCGGTGGCGACCGATCTGAGAGCATCGAGGATGGGAAGTCGGAGAGTGGTAGCTGGAAAGGAAGTGGAGAGAAGAAAGGTTTGGCTGCACTGAGAGATCAAGAAGGGGAAGACAGCACTGGGAGTGAGATCACACTTAGATTCTAG 1350 0.4844 MASQAELSMEYKPYTYSTLLKSFADQTDQTYKLEDFLSRLEEERLKIDAFKRELPLCMQLLTNAVDASRQQLQNFRSNQGTRPILEEFIPIKHPNSQESTEKASNISDKASWMTSAQLWSQASEGTKPKSTITSPKESADTGFSVSPRLALEHRNGGAFLPFSKERNSCQGIGDLPELGLACSESEMEVKKCEETEKCSKRENSGKGGSFEGIVDQGKVAAIATEAQTTNTTTTTTNTTGRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSLHAGAPTPQLVVLGGIWVPPEYATAAAHSDGTSFYSPHPTSHVPPQHYCAATPMSQEFYNSAPSLPLPPPHDHTLHHHFHMYKTAPHTQSSPESDVRSGGDRSESIEDGKSESGSWKGSGEKKGLAALRDQEGEDSTGSEITLRF 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00625 449 MobiDBLite consensus disorder prediction 401 443 - -
Vian4g00625 449 MobiDBLite consensus disorder prediction 388 449 - -
Vian4g00625 449 Gene3D - 241 299 - -
Vian4g00625 449 Coils Coil 33 53 - -
Vian4g00625 449 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 421 IPR044787 GO:0003700|GO:0006355
Vian4g00625 449 MobiDBLite consensus disorder prediction 121 142 - -
Vian4g00625 449 NCBIfam myb-like DNA-binding domain, SHAQKYF class 242 297 IPR006447 GO:0003677
Vian4g00625 449 SUPERFAMILY Homeodomain-like 239 300 IPR009057 -
Vian4g00625 449 FunFam Myb family transcription factor 241 299 - -
Vian4g00625 449 Pfam Myb-like DNA-binding domain 244 295 IPR001005 -
Vian4g00625 449 MobiDBLite consensus disorder prediction 121 141 - -
Vian4g00625 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 299 IPR017930 -
Vian4g00625 449 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00625 Vian-Chr4 7539407 7541760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00625 1 449 G2-like Transcription Factor Family AT2G03500 49.474 3.90e-120 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian4g00625 Myb_DNA-binding 9.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00625 - - gmx:100815048 687.182