Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00611 ATGGCTGAAGCAGAAGACAAGGATACCAGCTCGCCTGAGCGCGAAAACCAAACCAAAATTAACAAGAAGAAGCTTCGCAAGAGAAAAAGACCAAATAAAAGCGAGAATAAACAAGAGGAGAAAAACGATGCGAAGATTGATAGCACGCTGACACAAACAGAAGATGCAGAAGAGGAAGAAGAAAAAGAAGAGACAAAGGTGAACACTAACGATTCATGTGGAATCATGAGTTCCGAGTTTTTCTCCTCTCTTACCTTGTCCGAAGCTACTTCCAAAGCCATTGCGGACATGGGCTTCGACCGTATGACTCAGATTCAAGCGCGGGCGATTCCGTCGCTACTGATCGGAAAGGACGTGCTGGGTGCGGCGAGAACGGGTGCTGGGAAAACCCTAGCGTTTTTGGTTCCGGCGGTGGAGTTGCTGTACAATGCTCAGTTCACTCTGCTCAATGGAACGGGTGTTGTTGTCATATGTCCGACGAGAGAGCTCGCGATTCAGACGCACGCCGTGGCGAAGGAACTGCTGAAGTACCATTCGCAAACGCTCGGGTTGGTGATTGGGGGTGCGGGGCGAAAGGGAGAGGCTGAGCGCATTGTGAAAGGGGTAAACCTATTGGTGGCGACGCCGGGTAGGCTCCTCGATCATCTTCAAAACACGAGGGGGTTCATATATAAAAACTTGAAGTGCCTAATGGTGGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAGATGAAGCAGATAATTAACATACTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCAGCCACACAGACAAAGAAGGTTGAGGATCTTGCCCGCTTATCTTTTCAGACAACTCCTATCTTTATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAACAGGGTTATGTTGTTGTTCCCTGTGCTAAGCGTTTTGTTGTTCTCTACTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTTTTTTTCTCTTCGTGCAACTCTGTCAAATTCCACGCAGATCTTCTCAAGTGCGCTGGGTTGGACTGCTTAAATATTCATGGAAAACAAAAACAACATGCCCGTACTACTACGTTCTTCAACTTCTGCAAAGCTGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATTCCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGCAAAGGGAAATGCTTTACTTTTTCTGATTCCTGAAGAATTGAAATTTCTTCACTATTTGAAGGCAGCGAAGGTTCCTGTGAAAGAGTATGCATTTGATCATAAGAAGCTGGCAAATGTACAATCTCATCTGGAGAAGTTGGTAGCTGGCATTTATCATTTGAACAATATGGCTAAAGAGGCATATCGGTCATATATATTAGCATATAATGCACATTCTATGAAAGATATATTCAATGTTCACCGCCTAGATTTACTGGCTGTTGCTACTTCATTTTGTTTTTCAAACCCACCGAAGGTGAATCTGAACATAGATAGCAGTGCTTCAAAGCATAGGAAGAAAGTACGCAAACTGGAAGGAAAGAGATGA 1632 0.4418 MAEAEDKDTSSPERENQTKINKKKLRKRKRPNKSENKQEEKNDAKIDSTLTQTEDAEEEEEKEETKVNTNDSCGIMSSEFFSSLTLSEATSKAIADMGFDRMTQIQARAIPSLLIGKDVLGAARTGAGKTLAFLVPAVELLYNAQFTLLNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGAGRKGEAERIVKGVNLLVATPGRLLDHLQNTRGFIYKNLKCLMVDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTTPIFIDVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCAGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGAKGNALLFLIPEELKFLHYLKAAKVPVKEYAFDHKKLANVQSHLEKLVAGIYHLNNMAKEAYRSYILAYNAHSMKDIFNVHRLDLLAVATSFCFSNPPKVNLNIDSSASKHRKKVRKLEGKR 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00611 543 CDD SF2_C_DEAD 300 430 - -
Vian4g00611 543 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 231 239 IPR000629 -
Vian4g00611 543 Pfam Domain of unknown function (DUF4217) 461 521 IPR025313 -
Vian4g00611 543 SMART DUF4217_3 460 523 IPR025313 -
Vian4g00611 543 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 285 IPR014001 -
Vian4g00611 543 MobiDBLite consensus disorder prediction 1 20 - -
Vian4g00611 543 Pfam DEAD/DEAH box helicase 103 274 IPR011545 GO:0003676|GO:0005524
Vian4g00611 543 SMART ultradead3 98 303 IPR014001 -
Vian4g00611 543 Pfam Helicase conserved C-terminal domain 315 419 IPR001650 -
Vian4g00611 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 441 IPR027417 -
Vian4g00611 543 SMART helicmild6 339 420 IPR001650 -
Vian4g00611 543 FunFam RNA helicase 296 526 - -
Vian4g00611 543 MobiDBLite consensus disorder prediction 32 52 - -
Vian4g00611 543 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Vian4g00611 543 PANTHER RNA HELICASE 34 462 - -
Vian4g00611 543 CDD DEADc_DDX18 90 287 IPR044773 GO:0003724|GO:0005524
Vian4g00611 543 Gene3D - 296 538 IPR027417 -
Vian4g00611 543 MobiDBLite consensus disorder prediction 1 70 - -
Vian4g00611 543 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 315 469 IPR001650 -
Vian4g00611 543 Gene3D - 13 289 IPR027417 -
Vian4g00611 543 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00611 Vian-Chr4 7373323 7379216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00611 79 438 Eukaryotic Initiation Factors Gene Family AT3G13920 31.608 1.70e-44 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00611 K13179 - gmx:100798290 936.406