Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00607 ATGATCATTGTAAAAGAAAAACAACATAGAAAAGACAAGAAAGCAGGGATGGAGCCTATGGACATAGTTGGAAAGGCCAAGGAAGACGCTTCGCTTCCTAAAGCAACAATGACGAAAATTATTAAGGAGATGTTGCCCCCGGACGTGCGTGTTGCCAGAGATGCGCAGGATTTGTTGATCGAATGTTGTGTCGAGTTTATAAACCTTGTCTCATCTGAGTCCAATGAAGTCTGTAACAAAGAGGAAAGAAGGACGATTGCACCAGAGCACGTGTTGAAGGCTTTAGGGGTTCTTGGATTTGGTGACTACATCGAGGAAGTTTATGCAGCATATGAACAACACAAGCTGGAGACAATGCAAGACTCTTTGAAAGGTGCCAAGTGGAGCAACAGGGCTGAGATGACAGAGGAAGAAGCATTGGCTGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCTAGAATGAATGGAGGAGCCATTACTTCCAAGCAGCCTGACGCTGACCAAAGTTTAGAGAGCTAA 519 0.4528 MIIVKEKQHRKDKKAGMEPMDIVGKAKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGDYIEEVYAAYEQHKLETMQDSLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGAITSKQPDADQSLES 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00607 172 SUPERFAMILY Histone-fold 28 159 IPR009072 GO:0046982
Vian4g00607 172 Coils Coil 131 151 - -
Vian4g00607 172 Gene3D Histone, subunit A 20 159 IPR009072 GO:0046982
Vian4g00607 172 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 95 IPR003958 -
Vian4g00607 172 MobiDBLite consensus disorder prediction 153 172 - -
Vian4g00607 172 PANTHER PROTEIN DR1 HOMOLOG 17 171 IPR044255 -
Vian4g00607 172 FunFam Negative cofactor 2 beta 22 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00607 Vian-Chr4 7346400 7351880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00607 17 168 CCAAT-DR1 Transcription Factor Family AT5G23090 81.818 7.61e-92 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vian4g00607 CBFD_NFYB_HMF 9.7e-23 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00607 K21751 - gmx:547635 302.367