Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00600 ATGCTGATGGCGAGTTCAAGAGAAGGTCAACAAGCCAAGCAAGAAGGTGGCGCCATTAATATTGACAAGTTTTCCAAGGCATCCTCCAGTACAAGACAATGGTCAGCGTTTAGAAATCCAAGAATTGTGAGAGTGTCACGTTCTTTCGGAGGAAAAGATAGGCACAGCAAGGTTTGCACCATAAGAGGGTTGAGGGACAGAAGGATTAGGCTCTCGGTGCCCACAGCAATTCAGCTATATGATCTTCAAGACAAGCTTGGGCTCAACCAACCCAGCAAAGTGATAGATTGGCTGCTTGAAGCAACTAAACTCGACATTGACAAGCTCCCTCCACTTCAATTCCCTCAGGGTTTTGGTCAATTTCATCATCCACAAACCCTACTCCCCTTTCATGATTCAAGTTCCTCTCAGCTTTCTCTCGGACCCTTCGGTGAATCTAGCTCCTCATTTGTAAGGGATGGTGGGGTTCAAAACTCCATGGCAAAGTCAAGGTATTGGGACAGTATAGATTCAATATCCAGATTGAAAGGCAAGGAAGGTGAAAAGGGCAAGTGGGTCAAAACAAACGAGGAAGAAAATCAAGAAGATGATGTTGTTGGAAGCTACAGCAACTTGCATGCATCTACTCAGAGGCTTTTTCCTATGGGTAGTGGTACCACCACTACTCACTCACTTTTACCTGGTTTGTTAAACAATACCATGCCATATAACCCCTACAACGCTGAGCCTTCTGGTTTGTCGTTATCCCAATTTGGAGGCCATGGCTTGTTTCCTTCCCAGCAGGTAGATCCCGGACCAAGCAGCGCAAATGGTGTTCAATTCCCATCTTCTTTGGCATTACCTTCATCTGCTTCTCAATTTTTCCTTGGTTCATCTTCTGCTACACCACCAATGTTCACTACCTATGCTCCATATCTTACACCCTCACTTGACAATGATCCTAGACAGTTCAACCACATTCAGTTCTTGAACTCAGCTTCTCAAATCTTGCCTCATCCTCTCATTCCATCTCTTCACTCCTTGAATCCACATGTCAGACCCTTCCCAGCAACACCCTTCAGTTCAAAGCTTTTGGAGTCAGATAGCATCCGCAGCCAACATGATAAGGATAGCTCTTCTTGA 1122 0.4519 MLMASSREGQQAKQEGGAINIDKFSKASSSTRQWSAFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVIDWLLEATKLDIDKLPPLQFPQGFGQFHHPQTLLPFHDSSSSQLSLGPFGESSSSFVRDGGVQNSMAKSRYWDSIDSISRLKGKEGEKGKWVKTNEEENQEDDVVGSYSNLHASTQRLFPMGSGTTTTHSLLPGLLNNTMPYNPYNAEPSGLSLSQFGGHGLFPSQQVDPGPSSANGVQFPSSLALPSSASQFFLGSSSATPPMFTTYAPYLTPSLDNDPRQFNHIQFLNSASQILPHPLIPSLHSLNPHVRPFPATPFSSKLLESDSIRSQHDKDSSS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00600 373 MobiDBLite consensus disorder prediction 1 21 - -
Vian4g00600 373 Pfam TCP family transcription factor 51 173 IPR017887 -
Vian4g00600 373 ProSiteProfiles TCP domain profile. 51 109 IPR017887 -
Vian4g00600 373 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 275 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00600 Vian-Chr4 7245567 7246688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00600 35 373 TCP Transcription Factor Family AT5G60970 40.341 1.52e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vian4g00600 TCP 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00600 - - gmx:100788984 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00842 1 8749299 8750393 Vian4g00600 4 7245567 7246688 PCT