Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00596 ATGTATAGTCAAGTGAATCGTGGTTCTCATATCGGGCAGAGTCCCGTCCCTCCCGTGCTGCCGCCTCCACCACCACCGCCTCAGTATCAGCAGGCCCCGCCGCATTTCCATCAGTTCCCACCCCCTAACGTTGGTGGTCCTCCTCCACCACCGCCTAACGTTGGTGGTCTACCACCACCACCACCACCCCCTCATCATGTTTATTTAAATGGACCTCCCCCTCCTCCTCCTCCACCGCGTCCTAATTCTTCTTCCCCAATTCCCATGAACCTTCCCGTTCAAGGTTCACATAATGTGATGCCAAATGCTGGACAATCCTACCCTATCCCTTCTCAATTACACCAGGGGAACACCGTGACACCGCAAACATCTTGGGCTCCAGGACCACCGCCTAGAGTATTGCCACCACCACCACCACCTCCACCTCATCCTCCCTCGGCTTCCCAAGGTCAAATTTTGTATAACCCTTCTTTCCATGGTCCACCTCTGCAGCCCGGTGATGTTCAGAATCTGCATAATGCTCCTCCACCACCACCCCATTCAACAGGTTATTTCCATTCAGCTGTTGGGAATTACCGAGTGCCTCCTGGTATTCCCCCACCGTTGCCATTGTCTCCACCACCTGCTCTTCCCGCTCCACCGCCTCCTCCTCTTAATGCTCCGGTAACCTCCTCCTCCTCCTCAAATGTTGCAGATGACCCTCACTCTGTGAAGACTGTGGATTTGGTTGATGGAGTTGTAGCTTCTCTTCCATCTGGTATTGCACCTGTACATGGTTCTGATTCTAAACGGGACGGTCCAAATTGTAGAGAGGTTGCTGATGCTGAAAAAGATGAGGATCTTCCCCCACCTAAGCCAACGGAAGAAAATACTGTACTGAAGATAGAAGCTTTGTGTCAGCTTATTGCTGAGAAGGGAGCTGATATTGAAGATAAGATTCGTCGAGATGAATTTCAAAATCCTGAATATGTATTTTTGTTTGGCGGAGACCCAGGAACTGAGGCTGCAATTTCTAACACTTATTTCCTGTGGATGAAGAAGAAATATAATTTAGATACTGGATGGCATGAAAAGAAAAGGCAACCAGAGAGAGTGTACTCTTCAGGTGAGCAGTATAACCTGCATGTTGCAACTGGGAGTGCTGATTCTGACATGGAAATGGAAGATGATATCACACTTTCTGACAAGGACCAAGGTTCAAACTTTGCAACTGAAGCCCTAAATCGAGATGATGAAGTGCTTAGAGTGAATCAGAATATAGCGCAGCCGCAGAAATTATCAGAGAATGACCCTGACAGGGTCATCTCATCCTGCAGTCCATCATACTTTGGATCCATGGGAGTCAGCAAACAGAATGAAGGACCCAAGATTTTATCTGATCTGGAGCACAGGAAATCTGTAAGACCAGTTACCAAGGTTCAAAGTCTTGAGAATGACTCCACTGAAGTGGCTGAGTTATCCTTGGGCAAGGCTTTGGAGGAAGCTGCAACTTGTGTTGATGATGATTTTGTTTGTACTGTTCCTTCTGATCACAATAAAACCGCTACTACTAATAGGGATTATGGGACACTCCTAGCGAGTGGCAGCCCTATAAGACTTCTTCAAGATTATGCTTCTGATGACACTTCAGCTAATGGGGATGAAAGCAATGCTGCAGATGCTAACGTTTTCACATTCTCAGAAGGTGTTGATACTGCTGGTGTTTCAGCAGTCCATAAAGATTCTGGGAGTCATATGGAGATTGGTATTGGATCTAAGAGTCCCGCCAGTACTCAAAAGGGGTTTGGGTCACTCTCCAGAACATCACAGGGTGGTTTAGAAATATCTACACATTTATTACAAGAGTCTAAGAAAACTCGCAACCGAAAAAAATCTGTCTCACGTTGGAGTAGTGATGGATGTGTTGACCATAACCTTGAAAATCAGATGTCTGTTAATTTTGCTTCATCGGTGGAAGCTTCCAAGGGCAAAGATAGATTAGAGGATACTGCCATTGACAGTGGTAGTAGAAGTGGTAATGCTGAAAAGGAAGATGAGGGGAAAACCTCAAAATTTGAACTAAATGTTATGAAAGTAGATGAATTCGGAAGACAACTAAGAGAAGGTCTTTCAGATAGTGATTCTGATGATTCATTCCATCACCGGACACGGAGGCTTAATAAAAGAGATAGAAGAAGCTGGAGCCGCAGCCAGTCTCCTCCAGACAGGAGGAGTAGGAGGAATAGGAGGAGTCCTCGGAGGAGAAGAGATAAAAGAAACAGGTCTCGCAGCTGGTCACCCCAGCACCGAAGAAGCAGTAGGTCACCGATCTCAAGACGGTCAGGTGACTTTCGTGGTGAGAATGTTAAAAGGGACAAAGATAAGTGCTTTGACTTTCTTCGAGGAAAGTGCTATCGGGGAGCATCTTGCAGGTACATTCACCATGAATCTGACATGAATGCTACTTCAAGACGCTATAAGAATAAACATGATCTGGAAGTCAGTTATTGTGGAAAAGAATCAAAGACTAATGGAGACATGACGAATATTTCTTCTAAAGTGTTTGATAATGAGCATGATGGAGTTAGAAGTCAGGATGATGATCTTAGCCTGAATGTGACTAGCCAGGAAGTAGTGCAGAAAAAAGAAGATTCAGGGAGGAATGTTGTTGCATCAACTATCATTCATCTTGATGGCCAATCAATTAATAGCAATCTAGGTAAATCTAAATCTATCAGAGAGGTTGCTCCTGAAATGCAGGAAACCATTGATGTGAGGGAGGATCCAAGGAATTCAATCCATGGGAATGATAGTTCGGAAGCAGGTGATTCTCAACAGCAACACATAGTTGAAGGCTTTCACCCTGATGCTTTAGGCCATGATAATACTTCTAAATCATCTGGTACATATAAAGATGTCATTCCCTCAGGAGATGGTCTTTTTGCTCAGAAAATGCAACTCAGTGTTTCTGCTGCTGGAATTCAGGAACAATCGTGTTATCCATCTCAGCATGTAAATGCATCCTATGTGACTGATGCATCACCTGATAAAAGATCAACTGTTTCTACTAGTGTTACTGAAGTTCCTGACAGTGTCACATCAGAGCAGGCTTCAAAAGAGTTACCTCCACAGTGTGACTCTTCAGTGGAATTTCCACGTCATAATTACCAGGTGTCTGCACCTGTTGTTTCACATTCCCCTGGCGAAAATCCTGCGCACATGCCACAAATTTCAAGGCAGTATAATGTGATGCAACAAAGGGCATTCTTTCCTTTCCAATCCACTGCCAGAGAAAAGTTTGAACCTTACCCAGCTCCTTTACACATGCAGAATGCTCACTTCAATGTACCACCTAATAGCTCTTGGACATCATTGCCATTGCCACCGCCACTGCCACCACTGCCACCGCCACCATCACTGCCACCGCCACCATCACTGCCACCGCCGCCATCAACAATGGTGTATGATCCCAATGTAAACTCAGGAGTTGTAAAATCATATATTTCTTCTGAATTTATTCAGAGTCAAATGCATTCAAGAACTGACTTTGTTTCCCAGACTTCCATGAAGCCTTTACCGAGTTGCTCTGAGAATTCTGATTTTCATGATATAGCATACCCTCCTATGCAGGACCATTCACGGACTTTTATGCTTACTGAACCTTTCTCTCCAAAGCAACTTCCTCAAGGGAACCCAGCTAGTCAATTACTTTCAGGATCTAGTCTCAACGGAGATGAATTTCATAATCAACTTCCATTGCAGGATTCAAAATTTTCCAGTGCCACATCATTTGGCAGCTTGCAGCCTCAACAAAATCAATTTTCCTGGAAATCGGATGTGAACAGACTACAACCTTCTCTGGGTGGCAAGTTACCCGCCGAAGGACATTTTATGACATCCTCACACATTGATTCATCATCACAAAAACAACAATCAATGTACAATTTTCAGTGTTCTGTATCCGAGGCTAATTTGGGTGTGCCTGGGGAGACTGCTACTGTTTCCAGATATCCACCTGATTTTCTGGATAGCAGTCATTCAACTTCTCTTCCACCATTTAGTGGATCAAGAATATCTGCTCACTATAATCCTTATGCATCAACCTTTGAGAAACCACTAAGTTCCAAATTTAGTTCAAGTATTTTTAGACAGGAAAGTGAAATAGTCCATGGTAACAATTATGCTTCTTCTAGATTGAACCATACTATGGTAAATGGGGAGGGTGATGGTGGGGTTGGATCAAGACATTCGGCATCTGCACCAAAATCAGGTAGAGCTCTTGGTCAGATTTTGCCTAGGTCTGGTGGTGACCAATATGATCCACTCTTTGACAGCATTGAACCATCATCTTCTTTGAGAAAAACTGATTTTGATCAGAAGCAGGAAGTCACAGGTGAATCCAATGTCAGCCTAAGGCCCAAAAGTTCTTACATTTCTTTGGATGTGGATGAGAAAAACAAGGAGGAGGAGGTTGGGGCTGTTGCCTCTACCACTTCTCAAAATAATGATGAATACAGTGAGACAGCGGATGCAGAAGTTGGTGCTATTGAAAATGAGAGCGTAAGTGATGATGTGGATGTTGCAAAAGTGACTACAAAGGAGGTTGATATTAATCGGGTCAAGTCTCCTGGAAAAAGAAAAAAGAGTAAGGATTCCAGATCAATGAAATTGTTCAAAGTTTCCATTGCGAACTTTGTAAAGGAGGTTTTGAAACCATCATGGCGACAAGGTAATATGAGTAAGGTTGCTTTTAAAACCATTGTGAAAAAGACCGTGGATAAAGTGTCAGGAGCCATGAAAGGCCACCGTGTACCTAAGTCCCAAGCGAAGATAAGTCAATATATTGATTCATCGCAGCGAAAGTTGACTAAACTTGTGATGGGTTATGTTGACAAGTACGTGAAGGTATGA 4890 0.4391 MYSQVNRGSHIGQSPVPPVLPPPPPPPQYQQAPPHFHQFPPPNVGGPPPPPPNVGGLPPPPPPPHHVYLNGPPPPPPPPRPNSSSPIPMNLPVQGSHNVMPNAGQSYPIPSQLHQGNTVTPQTSWAPGPPPRVLPPPPPPPPHPPSASQGQILYNPSFHGPPLQPGDVQNLHNAPPPPPHSTGYFHSAVGNYRVPPGIPPPLPLSPPPALPAPPPPPLNAPVTSSSSSNVADDPHSVKTVDLVDGVVASLPSGIAPVHGSDSKRDGPNCREVADAEKDEDLPPPKPTEENTVLKIEALCQLIAEKGADIEDKIRRDEFQNPEYVFLFGGDPGTEAAISNTYFLWMKKKYNLDTGWHEKKRQPERVYSSGEQYNLHVATGSADSDMEMEDDITLSDKDQGSNFATEALNRDDEVLRVNQNIAQPQKLSENDPDRVISSCSPSYFGSMGVSKQNEGPKILSDLEHRKSVRPVTKVQSLENDSTEVAELSLGKALEEAATCVDDDFVCTVPSDHNKTATTNRDYGTLLASGSPIRLLQDYASDDTSANGDESNAADANVFTFSEGVDTAGVSAVHKDSGSHMEIGIGSKSPASTQKGFGSLSRTSQGGLEISTHLLQESKKTRNRKKSVSRWSSDGCVDHNLENQMSVNFASSVEASKGKDRLEDTAIDSGSRSGNAEKEDEGKTSKFELNVMKVDEFGRQLREGLSDSDSDDSFHHRTRRLNKRDRRSWSRSQSPPDRRSRRNRRSPRRRRDKRNRSRSWSPQHRRSSRSPISRRSGDFRGENVKRDKDKCFDFLRGKCYRGASCRYIHHESDMNATSRRYKNKHDLEVSYCGKESKTNGDMTNISSKVFDNEHDGVRSQDDDLSLNVTSQEVVQKKEDSGRNVVASTIIHLDGQSINSNLGKSKSIREVAPEMQETIDVREDPRNSIHGNDSSEAGDSQQQHIVEGFHPDALGHDNTSKSSGTYKDVIPSGDGLFAQKMQLSVSAAGIQEQSCYPSQHVNASYVTDASPDKRSTVSTSVTEVPDSVTSEQASKELPPQCDSSVEFPRHNYQVSAPVVSHSPGENPAHMPQISRQYNVMQQRAFFPFQSTAREKFEPYPAPLHMQNAHFNVPPNSSWTSLPLPPPLPPLPPPPSLPPPPSLPPPPSTMVYDPNVNSGVVKSYISSEFIQSQMHSRTDFVSQTSMKPLPSCSENSDFHDIAYPPMQDHSRTFMLTEPFSPKQLPQGNPASQLLSGSSLNGDEFHNQLPLQDSKFSSATSFGSLQPQQNQFSWKSDVNRLQPSLGGKLPAEGHFMTSSHIDSSSQKQQSMYNFQCSVSEANLGVPGETATVSRYPPDFLDSSHSTSLPPFSGSRISAHYNPYASTFEKPLSSKFSSSIFRQESEIVHGNNYASSRLNHTMVNGEGDGGVGSRHSASAPKSGRALGQILPRSGGDQYDPLFDSIEPSSSLRKTDFDQKQEVTGESNVSLRPKSSYISLDVDEKNKEEEVGAVASTTSQNNDEYSETADAEVGAIENESVSDDVDVAKVTTKEVDINRVKSPGKRKKSKDSRSMKLFKVSIANFVKEVLKPSWRQGNMSKVAFKTIVKKTVDKVSGAMKGHRVPKSQAKISQYIDSSQRKLTKLVMGYVDKYVKV 1629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00596 1629 MobiDBLite consensus disorder prediction 1004 1039 - -
Vian4g00596 1629 SUPERFAMILY Surp module (SWAP domain) 275 348 IPR035967 GO:0003723|GO:0006396
Vian4g00596 1629 MobiDBLite consensus disorder prediction 263 285 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 739 761 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 194 221 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 124 147 - -
Vian4g00596 1629 ProSiteProfiles Zinc finger C3H1-type profile. 783 810 IPR000571 GO:0046872
Vian4g00596 1629 MobiDBLite consensus disorder prediction 1126 1146 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 15 86 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 575 602 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 87 123 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 251 289 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 1485 1500 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 913 938 - -
Vian4g00596 1629 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 306 1628 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 652 685 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 1004 1036 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 913 927 - -
Vian4g00596 1629 Gene3D Surp module 268 352 IPR035967 GO:0003723|GO:0006396
Vian4g00596 1629 MobiDBLite consensus disorder prediction 654 685 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 701 716 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 701 780 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 1393 1500 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 1 237 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 584 602 - -
Vian4g00596 1629 MobiDBLite consensus disorder prediction 1214 1243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00596 Vian-Chr4 7165906 7175998 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian4g00596 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00596 - - vum:124822814 2806.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00596 4 7165906 7175998 Vian4g00596 4 7165906 7175998 ECH