Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00594 ATGACGTTGGGCGCGAAATATGCAAACGCGCGTTTCCTCGGAAGCACTTCCGCTTTCTCTCAGTACAGAAAAAAAATCGCGGTGGCGAACCTATTCCAGAAGTACGGTTTCCCCTCTTCCCTCATCCCCTCCTTCCTCTCCCGCAACCCTTCCCTTCTCCAAGCCCCTCTCCCTCAACTCCACCATTCCCTCACCACCCTCTTCTCCCTCCGCATCCCCCAAAACGACATCGTTTCCCTCCTCACTACCAACCCCTCCCTCCTCCACCATTCCTTCTACCACACTCTCCAATCCCGTCTCCCCCATCTCCAAACGCGCTTCCCCACACTCTCCCCTTCCACCCTCCTCAACCTTCTCCTCTCTTCCACAAAGTTACATCTCGACCCGCTCCAACTCTCACCCAAGCTCAACGCGCTCAAAACCGATTTCGCATTTTCCGACGCCACCGTGGCCAGCATTCTGGAAGGGTTCCCCGACGTGGTTGTCACTGGCGAGAACGAAATCGCGAGCGTGATAGATTTTCTCTCGGGGTTCGGAATTCCCCGGGACGAGATTGATCTCGTTGTCCGTTCGTTTCCTAGGGTTTTGGCGCTCGGTGTTGAGCAGAGACTGATGCCGTTGTTTCGGGAAATCAAGGAGCTAGGGTTTTCCAATCGTGAGATGAGGAGCGAGATCTCGCGGGACCCGAGGATTCTGGGGATGGAAATTGGAGAGCTTACGCGGTGTTTGAGACTGATAGAGAGTTTGAAATGCAGGGAAAGTATCAAAGAGAGGGTTATAGGTTCGGGTCTGATGAGAGCGTGTTTTGAGGTGAAATTAAGAGTGGATTGTTTGTGTGGGTATGGTTTGACTCGAAGGGATGCTCTGAAGGTTATTTGGAAGGAGCCTAGGGTGATTTGTTACGAGGTTGGGGATGTTGAAAGGAAGGTTGAGTTTCTGGTGCAGAGGATGAAGTGTAGTGTAGAGTGTTTGGCTGAGGTGCCTAAATACTTGGGTGTGAATTTTGAGAAGCAGATTGTGGCTAGGTACAGTGTGGTAGAGTGTTTGAGGGGGAAAGGTGCCATTGGGTTTGAGTTTGGGTTGAAGGATTTGGTTATGCCTTCTAGGCTTAGGTTCTATAATCTTTATGTGAAGCCATACCCGGAGTGTGAAAAGATCTATGGAAGGTGTGCTAATGGAAGGTTTGTTGCCACCGGAAGCACTGATACAATAATAAAGCTATTTGAGGGTTCGAAGATCAATCAGATGTTTCTACCAAAGGCAAAGGATGGTCCTTAG 1278 0.5039 MTLGAKYANARFLGSTSAFSQYRKKIAVANLFQKYGFPSSLIPSFLSRNPSLLQAPLPQLHHSLTTLFSLRIPQNDIVSLLTTNPSLLHHSFYHTLQSRLPHLQTRFPTLSPSTLLNLLLSSTKLHLDPLQLSPKLNALKTDFAFSDATVASILEGFPDVVVTGENEIASVIDFLSGFGIPRDEIDLVVRSFPRVLALGVEQRLMPLFREIKELGFSNREMRSEISRDPRILGMEIGELTRCLRLIESLKCRESIKERVIGSGLMRACFEVKLRVDCLCGYGLTRRDALKVIWKEPRVICYEVGDVERKVEFLVQRMKCSVECLAEVPKYLGVNFEKQIVARYSVVECLRGKGAIGFEFGLKDLVMPSRLRFYNLYVKPYPECEKIYGRCANGRFVATGSTDTIIKLFEGSKINQMFLPKAKDGP 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00594 425 PANTHER CGI-12 PROTEIN-RELATED 125 380 IPR003690 GO:0003690|GO:0006355
Vian4g00594 425 SMART mt_12 222 252 IPR003690 GO:0003690|GO:0006355
Vian4g00594 425 SMART mt_12 151 181 IPR003690 GO:0003690|GO:0006355
Vian4g00594 425 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Vian4g00594 425 SMART mt_12 321 355 IPR003690 GO:0003690|GO:0006355
Vian4g00594 425 SMART mt_12 43 73 IPR003690 GO:0003690|GO:0006355
Vian4g00594 425 SMART mt_12 289 320 IPR003690 GO:0003690|GO:0006355
Vian4g00594 425 FunFam Transcription termination factor MTERF15 mitochondrial 165 387 - -
Vian4g00594 425 Pfam mTERF 273 364 IPR003690 GO:0003690|GO:0006355
Vian4g00594 425 Pfam mTERF 118 239 IPR003690 GO:0003690|GO:0006355
Vian4g00594 425 Gene3D Transcription termination factor 3, mitochondrial 163 389 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00594 Vian-Chr4 7140533 7142622 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian4g00594 mTERF 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00594 - - vum:124840038 619.387