Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00592 ATGGAACACAAAATGTTACCTGCCGTTGGATCTGTTGTCCCTCGTGGTGCTTTTGCAGTCTTGCTCCTGCTGCTCTTCTTTTTCTCCTCATTCAGTTCTACAGAAGCCTATGATCCGCTTGATCCAACTGGCAATATAACAATCAAATGGGATGTCATTAGCTGGACTCCAGATGGCTATCTTGCTGTTGTTACAATGTACAACTTTCAACAATATCGCCACATTCAGTCCCCTGGATGGTCATTAGGGTGGACATGGGCTAAAAAAGAAGTAATTTGGAACATGATGGGAAGCCAAACCACAGAGCAAGGGGACTGTTCAAAGTTCAAAGCAGGTATTCCTCATTGTTGTAAGAAGGATCCAACAGTGGTGGATTTACTGCCAGGGACTCCTTACAACCAGCAGATTGCAAATTGTTGCAAAGGGGGTGTCCTAAATTCATGGGGTCAGGACCCCAGTAGTGCAGTAAGTTCTTTCCAGATTAGTGTTGGTTCTGCTGGAACCACAAACAGAACGGTCAAACTGCCTAAAAATTTTACCCTCAAAGCACCAGGACCTGGCTACACTTGTGGTCCTGCAAAGGTTGTGAAACCAACTACATTTATTACCAGTGACAAGAGGAGAACCACCCAAGCCATGATGACTTGGAATATTACCTGCACTTATTCTCAATTCCTGGCTCAAAAGACTCCAAGTTGTTGTGTTTCCCTCTCATCCTTCTATAATGACACAGTAGTAAACTGCCCAACCTGCACCTGTGGCTGCCAAAACAAAACAGAATCTGGCAGCTGCGTAGAACCAAATTCCCCGCATTTAGCTTCAGTTGTATCAGCATCAGGCAAAGCTGCAAACACACCTCTAGTTCAGTGCACCAGCCACATGTGTCCTATTCGAGTGCATTGGCATGTGAAACTCAATTACAAAGAGTACTGGAGGGTGAAGGTCACAATTACTAATTTCAACTACAGAATGAACTACTCTCAGTGGAACCTTGTTGTGCAGCATCCCAATTTAGATAATATTACCCAGCTCTTCAGTTTTCAGTACAAGTCACTTACACCCTATGAGGGCTTGAATGATACAAGTATGCTGTGGGGAATCAAGTTCTACAATGATTTTCTTTCTTCAGCTGGACATCTTGGTAACGTTCAATCAGAAATCTTACTTAGAAAAGACAAATCAACCTTCACATTTGATAAGGGATGGGCATTCCCCAGAAGGATTTATTTCAACGGGGATAACTGTGTTATGCCTCCTCCAGATGCCTACCCTTGGCTGCCAAATGCAAGTCCTAAACTAGTTTTCTCTGTGCTAAGTACACTCATAGCCACTTTAGCTTCTTTGATAAGTGTTATTTAA 1359 0.4319 MEHKMLPAVGSVVPRGAFAVLLLLLFFFSSFSSTEAYDPLDPTGNITIKWDVISWTPDGYLAVVTMYNFQQYRHIQSPGWSLGWTWAKKEVIWNMMGSQTTEQGDCSKFKAGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWGQDPSSAVSSFQISVGSAGTTNRTVKLPKNFTLKAPGPGYTCGPAKVVKPTTFITSDKRRTTQAMMTWNITCTYSQFLAQKTPSCCVSLSSFYNDTVVNCPTCTCGCQNKTESGSCVEPNSPHLASVVSASGKAANTPLVQCTSHMCPIRVHWHVKLNYKEYWRVKVTITNFNYRMNYSQWNLVVQHPNLDNITQLFSFQYKSLTPYEGLNDTSMLWGIKFYNDFLSSAGHLGNVQSEILLRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASPKLVFSVLSTLIATLASLISVI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00592 452 PIRSF COBRA 11 452 IPR006918 GO:0010215|GO:0016020
Vian4g00592 452 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215|GO:0016020
Vian4g00592 452 PANTHER PROTEIN COBRA 24 441 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00592 Vian-Chr4 7128214 7131183 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00592 48 439 COBRA Gene Family AT5G60920 79.747 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00592 - - gmx:100815779 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00592 4 7128214 7131183 Vian4g00592 4 7128214 7131183 ECH
Vian1g00849 1 8835828 8839325 Vian4g00592 4 7128214 7131183 PCT