Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00575 ATGAGCAACCCTGGAGATGAAAAGGAGCTGTGTCAAAAGAAGAGGAAATCCACCATTTGTGAAGCCTCTAACTTTAGGACATCGAGGAGAAGATTCTGCAGCAGCAACCAAATTGAAGAGGAGATGAACAAGGGAGTTTCAACAACATTGAAGCTTTACGATGACCCATGGAAGATCAAGAAGACTCTAACTGATAGTGATTTGGGAATCCTAAGTAGACTCTTGCTGGCTGCAGATTTGGTGAAGAAACAAATTTTGCCTATGTTGGGTGCAGATCATGCAAGAGCTGCTGAAACTGAAGAAGGTACCCCAGTTAGAGTTTGGGACATGGACACCAAATCCATGCACCAACTCGTCCTAAAGCGATGGTCTTCATCCAAGAGCTATGTTCTTATTGGAAAGTGGAACCAAGACTTCGTCAGAAGAAGAGATCTAAAGAAAGGTGATGAGATCGGATTTCATTGGGATCCATATAATTGCATTTTCAATTTCTGTGTTCTCAAACGAGCTATGCCAGATAATTAA 525 0.419 MSNPGDEKELCQKKRKSTICEASNFRTSRRRFCSSNQIEEEMNKGVSTTLKLYDDPWKIKKTLTDSDLGILSRLLLAADLVKKQILPMLGADHARAAETEEGTPVRVWDMDTKSMHQLVLKRWSSSKSYVLIGKWNQDFVRRRDLKKGDEIGFHWDPYNCIFNFCVLKRAMPDN 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00575 174 Gene3D - 56 171 IPR015300 -
Vian4g00575 174 SUPERFAMILY DNA-binding pseudobarrel domain 55 169 IPR015300 -
Vian4g00575 174 CDD B3_DNA 57 168 IPR003340 GO:0003677
Vian4g00575 174 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 28 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00575 Vian-Chr4 6860582 6861106 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00575 59 154 RAV Transcription Factor Family AT1G50680 34.951 1.54e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00575 - - pvu:PHAVU_009G204600g 350.517