Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00571 ATGGAAGCCAGCGCTGGACTGGTAGCAGGTTCGCATAACCGCAATGAGCTCGTTGTCATTCATGGCCATGAAGAGTACTATTATGTCATCGGGGGTTTGGTGCAGCACAAGCCTTTGAAGAACTTGGATGGTCAAGTATGTGAGATTTGTGGTGATGGCGTTGGACTCACGGTGGATGGAGACTTATTTGTGGCTTGCAATGAGTGTGGTTTTCCAGTGTGCAGACCTTGCTATGAGTACGAAAGAAGAGAAGGGGGCCAGCTTTGTCCACAGTGCAAAACCAGATATAAGCGTCTCAAAGGGAGCCCGCGGGTGCAGGGAGATGATGAGGAGGAGGATGTGGATGACATTGAGCATGAGTTCAATATTGATGATGAAAAGAACAAGCATGGTCATGCTGCAGAGGCCATGCTTCATGGGAAAATGAGCTATGGAAGAGGTCCTGAAGATGATGAGAATTCCCAGTTCCCAATACCTGTCATTTCTGGGGGCCGATCTAGGCCTGTTAGTGGCGAGTTCCCAATATCATCCAATGGTTATGGGGAGCAGATGTTGTCTTCTTCATTGCATAAACGAGTGCATCCATATCCAATGTCTGAACCTGGGAGTGCCAGATGGGATGAAAAGAAAGAGGATGGATGGAAAGAAAGGATGGATGACTGGAAATTGCAGCAAGGCAATTTGGGGCCTGAACCTGAAGAAGATGCAGATGCAGACATGTCAGATGAAGCAAGGCAACCACTTTCAAGGAAAGTACCAATAGCATCTAGCAAAATCAATCCATACAGAATGGTTATTGTGGCACGCCTTGTCATTCTTGCTTTCTTCCTCAGATACAGACTTATGAATCCTGTGCATGATGCACTGGGGCTGTGGCTAACCTCTATCATATGTGAAATATGGTTTGCTTTTTCATGGATTCTGGATCAGTTTCCCAAGTGGTTTCCTATTGATCGAGAGACCTACCTTGACCGTCTTTCCATCAGGTATGAGCGTGAAGGTGAACCAAACATGCTTTCTCCTGTAGATGTCTTTGTTAGTACCGTGGATCCAATGAAGGAACCTCCTCTGGTTACCGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAGATATCATGCTATATTTCGGATGATGGAGCCTCAATGTGTTCATTTGAGTCCCTGTCAGAAACTGCAGAGTTTGCAAGGAAGTGGGTACCGTTTTGTAAGAAATTTTCTATAGAACCTCGCGCCCCTGAGATGTACTTCAGTGAGAAGATAGACTACTTAAAGGACAAAGTGCAACCCACCTTTGTCAAGGAGCGTCGAGCCATGAAGAGGGAATACGAAGAGTTTAAGGTTAGGATCAATGCACTTGTTGCAAAGGCCCAGAAAGTTCCTCAGGGAGGATGGATTATGCAGGATGGGACACCATGGCCAGGAAACAACACTAAGGATCATCCTGGCATGATTCAAGTGTTTCTTGGAAGCAATGGGGGTCTAGATACTGAAGGAAACCAGCTTCCTCGTCTTGTTTATGTTTCTAGAGAGAAAAGACCTGGTTTTCAACACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTATCTGCTGTTCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCACTATGTCAATAACAGCAAGGCTGCCAGAGAGGCCATGTGCTTCTTGATGGACCCCCAGATTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGACGGTATTGATACACATGATCGTTATGCCAACAGAAACACGGTTTTCTTTGATATTAACATGAAGGGTCTTGATGGTATTCAAGGACCTGTATATGTGGGGACTGGGTGTGTTTTCAGGAGGCAAGCTTTGTATGGCTATGATCCTCCAAAGGGCCCCAAGCGTCCAAAAATGGTAAGCTGTGATTGCTGCCCTTGTTTTGGAAGCCGCAAGAAGTACAAGGAGAAGAGTGATGCAAATGGAGAGGCTGCTGCAAGCCTAAAAGGGATGGATGATGACAAAGAGATACTGATGTCCCAAATGAATTTTGAGAAGAAATTTGGACAGTCCTCTATCTTTGTGACTTCTACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCTTCGAGTCCAGCTGCCCTGCTTAAAGAAGCCATTCATGTGATCAGCTGTGGATATGAAGATAAAACTGAATGGGGACTTGAGCTTGGTTGGATCTATGGATCTATCACAGAAGATATTTTAACAGGCTTTAAGATGCATTGCCGTGGGTGGAGGTCTATTTACTGTATGCCTAAGAGAGCTGCATTCAAGGGCACTGCTCCAATCAACTTGTCAGATCGTCTCAATCAGGTGCTTCGTTGGGCACTTGGTTCCATTGAGATTTTCTTCAGTCACCATTGCCCTCTATGGTATGGCTTCAAGGAAAAGAAGCTAAAGTGGCTTGAGAGATTTGCCTATGCAAACACAACTGTGTATCCATTCACCTCCATTCCTCTTGTTGCCTATTGTATTCTCCCTGCAGTTTGCTTACTCACTGACAAATTCATCATGCCACCGATAAGCACCTTTGCTGGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATTGCAACTGGTATCCTAGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAGTGGTGGAGAAATGAGCAGTTTTGGGTTATTGGTGGAGTATCAGCTCACCTTTTTGCTGTGATACAAGGTCTGCTAAAGGTTCTGGCTGGAATTGACACCAACTTCACAGTCACATCCAAGGCAGTAGATGATGAGGACTTTGGAGAACTATACACCTTTAAGTGGACTACTCTCCTAATTCCTCCAACCACTATCTTGATCATTAACATTGTTGGTGTTGTTGCTGGAGTCTCAGATGCCATAAACAATGGCTACCAATCCTGGGGACCACTTTTTGGAAAACTCTTCTTTTCTTTCTGGGTGATTGTTCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCCACCATTGTGGTCATTTGGTCAGTTCTATTGGCTTCTATTTTCTCTTTGCTGTGGGTAAGAATTGATCCGTTTGTCCTCAAGACTAAGGGACCTGATACCAAGTTATGTGGAATCAACTGCTGA 3153 0.45 MEASAGLVAGSHNRNELVVIHGHEEYYYVIGGLVQHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREGGQLCPQCKTRYKRLKGSPRVQGDDEEEDVDDIEHEFNIDDEKNKHGHAAEAMLHGKMSYGRGPEDDENSQFPIPVISGGRSRPVSGEFPISSNGYGEQMLSSSLHKRVHPYPMSEPGSARWDEKKEDGWKERMDDWKLQQGNLGPEPEEDADADMSDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLSPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCSFESLSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGSNGGLDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQIGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYDPPKGPKRPKMVSCDCCPCFGSRKKYKEKSDANGEAAASLKGMDDDKEILMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGFKEKKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAVDDEDFGELYTFKWTTLLIPPTTILIINIVGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00571 1050 FunFam Cellulose synthase 31 120 - -
Vian4g00571 1050 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 245 1017 - -
Vian4g00571 1050 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 488 633 IPR029044 -
Vian4g00571 1050 MobiDBLite consensus disorder prediction 222 247 - -
Vian4g00571 1050 SUPERFAMILY RING/U-box 35 117 - -
Vian4g00571 1050 Coils Coil 440 460 - -
Vian4g00571 1050 CDD mRING-HC-C4C4_CesA 45 95 - -
Vian4g00571 1050 Pfam Cellulose synthase 342 1044 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vian4g00571 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 120 IPR013083 -
Vian4g00571 1050 Pfam Zinc-binding RING-finger 37 114 IPR027934 -
Vian4g00571 1050 SUPERFAMILY Nucleotide-diphospho-sugar transferases 355 863 IPR029044 -
Vian4g00571 1050 FunFam Cellulose synthase 459 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00571 Vian-Chr4 6797748 6802688 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00571 1 1050 Cell Wall Biosynthesis AT5G17420 84.886 0.0 1833