LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g00570	ATGGAAGCTAGTACAGGTCTTTTTGCTGGTACTCCAAACAGCAAAGAGCTTGTGGCCATTCAAGGACACGATGAGCCTAAGCCGGTGAAGAACTTAGATGGTCAGCTCTGTGAGATATGTGGTGATTCTGTGGGAGTTACAGTTGAAGGAGACTTGTTTGTAGCTTGTGAAGAGTGTGGTTTCCCTGTGTGCAGGCCATGCTATGAGTATGAGAGAAGGGAAGGGACTCAAGTTTGTCCTCAGTGTCATACAAGATACAAGCGCATCAAAGGAAGTCCAAGAGTGGAGGGAGATGAGGATGAAGACGATGTGGATGACATTGAACATGAATTCAAGCATGAAGAGATGCAAAAGGGAAACATGATCCATGGAGATGATGATGGGAATTCTGAATCGGGTTTAGCAAAGGTGAATGGGGAGCTGCTTTCTACAAGTGTGGGAGAACCTGAAGCAGGTGCAAAGCTGGATGACAAGGAGAACATAGATGAGTGGATGTTGCGCCAAGGGAATCTGTGGCCTGAAACTGATGCCTCAGTTGATCAGGAAAAGGCCATGAAAGAGCCATTGTCAAGGAAAGTAGCAATACCATCAGGCAAACTCAGTCCTTACAGAATGATGGTTGTGGCTAGATTCCTCCTTCTATTACTCTTCTTCCAATACAGAATCTTCCATCCAGTACCTGATGCAGTTGGACTATGGTTTGAACAAGAGAACAAACCAAATATGCTTTCTCCAATAGATATCATTGTCACTACTGTGGATCCAATCAAGGAACCTCCTCTTGTGACAGCCAACACTGTTCTTTCAATCTTGGCCCTGGATTACCCTGCTGACAAAATCTCATGCTATGTTTCTGATGACGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCCGAGTTTTCCAGAAAGTGGGTTCCTTTCTGCAAAAAGTTCTCTATAGAACCCAGAGCACCAGAAAAGTACTTCTCTGAGAAAATAGATTTTCTAAAGGATAAGCTTCAATCCACTTACGTAAAAGAACGGCGTACTATGAAGAGAGAATACGAAGAATTTAAGGTGAGAATAAATGCACTGGTGGCTAAATCTATGCGAGTTCCCCCAGAAGGGTGGACTATGAAAGATGAGACACCATGGCCAGGAAACAACCCCAAAGATCATCCAAGTATGATACAGGTCCTTCTTCCACACATTGTTGGTAATGAACTTCCTTGTCTTGTCTACACATCTCGTGAGAAAAGGCCTGCATTTCAACACCACGGCAAAGCTGGTGCAATCAACGCCTTGCTTCGAGTATCAGCAGTGTTAAGCAATGCTCCTTTTGTGCTCAACTTGGATTGCAATCACTACGTAAATAACTGCAAAGTGGTGCGAGAGGCCATGTGTTTCTTTATGGACATACAACTTGGGAATGGCATTGGCTTTGTACAGTTTCCATTAAGATTTGACAGCCTAGATAGGCATGATCGTTATGCCAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGAATTCAGGGACCTGCTTATGTTGGTTCAGCATGTATCTTCAGAAGGAAATCCTTAACTGGCAGTGACTCACCAGTGTCTTCAAAACGCCCAAGCATGGTGCAAGTACATTCAAAACAGGATGAGAATGGAGAAGAAGCTAGCATAACAGCAGCAACAGATGAGGAAAAGGAACTATTGAAGTCACAGATGAATGATGAAAATAAATTTGGGAATTCCAATCCTATCATGAACCCGTCATTAACTGAAGAGGGTGGTATTGATCCTTCTTCCAGTCAGGAAGTTTTGCTTAAAGAAGCTATTCATGTCATGGGTTCTAAATATGAAGACAGAACTCTCTGGGGATATGAGGTGGGTTTAAGTTATGGATCTATAGCAGCAGATACTCTGACAAGTTTGAAGATGCATTGTCATGGTTGGAGGTCTGTATATTGCATGCCAAAAAGAGATCCATTCAGGGGTACAGCTCCTATCAACCTCACAGATAGACTCAACCAGGTGCTGAGATGGGCAGTGGGTTCACTTCAGATCCTATTCAGCCACCATTGCCCTCTTCTGTATGGCCTCAGTGGTGGAAGACTCAAGGGACTTCAAAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCCTCCTAATATACTGTATCATTCCTGCTATATGCTTGCTCACTGATAAATTCATCACACCATCGGTTGGCACTTTTGCAAGTCTAGTTTTCACCGCATTGTTCATCTCAATCTTTGCCTCGGCTATTCTTGAATTGAGATGGAGTGGAGTTAGCCTGGAGGAATGGTGGAGAAGCCAGCAATTCTGGGTGATTGGGAGTGTGTCTGCAAACCTCTTTGCCGTTGTGCAGAGCATTATGGGAGCTCTTCCACTGGGTAGAGTGAACACAAACTTCAGCACTGTATCAAAGGTTCCAGATGATGTAGAGTTTCGTGAACTGTATACCATTAGATGGACTGCACTTCTAATACCTCCAACCACCATCATAATAATCAACCTCATTGGTATAGTGGCTGGCTTCACAGATTCCATAAACAGTGGAGAACATTCTTGGGGAGCACTGCTTGGGAAACTCTTCTTTTCTTTATGGGTTATTGTCCATTTGTATCCTTTCCTTAAAGGTCTAATGGGTAGGCAGAACAGAACACCAACTCTTATTGTCATATGGTCTGTGCTCTTGGCTTCTATCTTCTCCTTGGTTTGGGTGAGAGTTGACCCTTTTGTGTTGAAAACCAAGGGACCTGATGTCAAGCAATGTGGAATCAGTTGTTGA	2820	0.4351	MEASTGLFAGTPNSKELVAIQGHDEPKPVKNLDGQLCEICGDSVGVTVEGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKHEEMQKGNMIHGDDDGNSESGLAKVNGELLSTSVGEPEAGAKLDDKENIDEWMLRQGNLWPETDASVDQEKAMKEPLSRKVAIPSGKLSPYRMMVVARFLLLLLFFQYRIFHPVPDAVGLWFEQENKPNMLSPIDIIVTTVDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFSRKWVPFCKKFSIEPRAPEKYFSEKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMKDETPWPGNNPKDHPSMIQVLLPHIVGNELPCLVYTSREKRPAFQHHGKAGAINALLRVSAVLSNAPFVLNLDCNHYVNNCKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRHDRYANKNTVLFDINLRCLDGIQGPAYVGSACIFRRKSLTGSDSPVSSKRPSMVQVHSKQDENGEEASITAATDEEKELLKSQMNDENKFGNSNPIMNPSLTEEGGIDPSSSQEVLLKEAIHVMGSKYEDRTLWGYEVGLSYGSIAADTLTSLKMHCHGWRSVYCMPKRDPFRGTAPINLTDRLNQVLRWAVGSLQILFSHHCPLLYGLSGGRLKGLQRIAYINSTVYPFSSIPLLIYCIIPAICLLTDKFITPSVGTFASLVFTALFISIFASAILELRWSGVSLEEWWRSQQFWVIGSVSANLFAVVQSIMGALPLGRVNTNFSTVSKVPDDVEFRELYTIRWTALLIPPTTIIIINLIGIVAGFTDSINSGEHSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRVDPFVLKTKGPDVKQCGISC	939

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g00570	939	Pfam	Zinc-binding RING-finger	27	104	IPR027934	-
	Vian4g00570	939	MobiDBLite	consensus disorder prediction	544	560	-	-
	Vian4g00570	939	CDD	mRING-HC-C4C4_CesA	35	85	-	-
	Vian4g00570	939	SUPERFAMILY	RING/U-box	22	107	-	-
	Vian4g00570	939	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	234	342	IPR029044	-
	Vian4g00570	939	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	400	532	IPR029044	-
	Vian4g00570	939	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	19	110	IPR013083	-
	Vian4g00570	939	Pfam	Cellulose synthase	554	933	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Vian4g00570	939	Pfam	Cellulose synthase	246	543	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Vian4g00570	939	FunFam	Cellulose synthase	19	110	-	-
	Vian4g00570	939	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	241	906	-	-
	Vian4g00570	939	MobiDBLite	consensus disorder prediction	528	560	-	-
	Vian4g00570	939	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	246	752	IPR029044	-
	Vian4g00570	939	MobiDBLite	consensus disorder prediction	529	543	-	-
	Vian4g00570	939	Coils	Coil	344	364	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g00570	Vian-Chr4	6788544	6793656	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian4g00570	1	939	Cell Wall Biosynthesis	AT5G17420	60.039	0.0	1235

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g00570	K10999		-	gmx:100777270	1691.78