Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00558 ATGCAACCACTAAGGACAAGAACCTTAACTCCACAAACACTGTCACCACCAAGGTCAAACGAACAAGAAGAAGTGTCCCCAGAGATTCCCCTCCTCAACGCAGCTCAATATACAGAGGAGTCACCAGGCACCGATGGACAGGCCGATATGAAGCTCATTTGTGGGACAAAAATTGCTGGAATGAGTCACAGAACAAGAAAGGACGACAAGGTTTCATGCCCCTTTCTAAGCCATGCAATTTTATTTTTTTTAATGTTATCTGATGAAGTCACTGACGTGTTTCCTTTTCGACTTGGCCATGGTTCTTCACATGTCCTACGTGCTTATGACGATGAAGAGGCCGCAGCACACGCTTACGATCTAGCAGCATTGAAATACTGGGGTCAAGACACCATCCTTAATTTTCCATTATCTACTTACCAGAATGAACTGAAAGAAATGGAGGGTCAATCTCGAGAAGAGTATATTGGATCATTACGAAGGAAAAGCAGCGGTTTTTCTCGTGGAGTTTCTAAATACAGAGGTGTTGCAAGACACCATCATAATGGAAGGTGGGAGGCTCGGATTGGCAGGGTTTTCGGCAACAAATATCTTTACCTCGGAACTTACGCAACGCAGGAAGAAGCTGCGACAGCATATGACATGGCAGCTATTGAATATCGAGGACTCAACGCTGTCACCAATTTCGACCTTAGCCGCTACATAAAGTGGCTTAAGCCAAACAATAACGATAACACTGCGAACTCTAATGTTCTTGACGCTAACCCTAATTCTGAGACCAACTTTACCCCAAATTCTGATCAACAACAAGGATTCAATTTTTTCCAGAGTCAAGAATCGACGGTGACTCAGCCTCGATCTTCTGGCGCCACGTCAGCCCTAGGACTTTTGCTGCAGTCATCCAAGTTCAAGGAGATGATGGAGATGACTTCCGCCGCCGATTTGTCGACGGCGGCGTCGGAGTCTGAGTTGGTGCCGTGCACGTTTCCCGATGATATTCAGACCTATTTCGAGTGTGAAGATTCCAACAGATATGGAGAAGGGGATGATAACATGTTTGGCGAGCTCAACGGGTTTGTGCCCCATATGTTCCATTGTGATGACTTTTAG 1110 0.4568 MQPLRTRTLTPQTLSPPRSNEQEEVSPEIPLLNAAQYTEESPGTDGQADMKLICGTKIAGMSHRTRKDDKVSCPFLSHAILFFLMLSDEVTDVFPFRLGHGSSHVLRAYDDEEAAAHAYDLAALKYWGQDTILNFPLSTYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNDNTANSNVLDANPNSETNFTPNSDQQQGFNFFQSQESTVTQPRSSGATSALGLLLQSSKFKEMMEMTSAADLSTAASESELVPCTFPDDIQTYFECEDSNRYGEGDDNMFGELNGFVPHMFHCDDF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00558 369 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 105 288 - -
Vian4g00558 369 FunFam AP2-like ethylene-responsive transcription factor 171 232 - -
Vian4g00558 369 MobiDBLite consensus disorder prediction 1 22 - -
Vian4g00558 369 ProSiteProfiles AP2/ERF domain profile. 57 136 IPR001471 GO:0003700|GO:0006355
Vian4g00558 369 SUPERFAMILY DNA-binding domain 171 232 IPR016177 GO:0003677
Vian4g00558 369 MobiDBLite consensus disorder prediction 1 29 - -
Vian4g00558 369 SMART rav1_2 172 236 IPR001471 GO:0003700|GO:0006355
Vian4g00558 369 SMART rav1_2 102 142 IPR001471 GO:0003700|GO:0006355
Vian4g00558 369 SUPERFAMILY DNA-binding domain 100 138 IPR016177 GO:0003677
Vian4g00558 369 Gene3D AP2/ERF domain 88 138 IPR036955 GO:0003700|GO:0006355
Vian4g00558 369 Gene3D AP2/ERF domain 171 232 IPR036955 GO:0003700|GO:0006355
Vian4g00558 369 Pfam AP2 domain 171 222 IPR001471 GO:0003700|GO:0006355
Vian4g00558 369 CDD AP2 171 232 IPR001471 GO:0003700|GO:0006355
Vian4g00558 369 ProSiteProfiles AP2/ERF domain profile. 172 230 IPR001471 GO:0003700|GO:0006355
Vian4g00558 369 MobiDBLite consensus disorder prediction 245 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00558 Vian-Chr4 6629712 6632249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00558 106 365 AP2-EREBP Transcription Factor Family AT1G79700 55.725 2.29e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian4g00558 AP2 7.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00558 K09285 - gmx:100795869 458.373