Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00557 ATGGAATTGAAAAAGGGAAAGCTTGTCAGGTTCTACTCGGATGGTAAAAAGCATAAAAAATCGCTGTGGGGAGCAGCTGAGCCTCCAGCGCTTAAACCTAGCAATTTGCTGCCATTGGGCAAAAATAGAATTGTTGAAACATTTAGAATTAGCGGATCGAAGGTATTCCCGGAGGACCATGAGCCGTGGCGTAAAAGAATACTTGACCCTGGTAGTGAGATTGTGTTGAAATGGAACCGGGTCTTCATAGTTTCATGCTTGGTGGCTCTTTTTGTTGATCCATTGTACTTTTATTTGCCTAGTGTGATAGAAAATACAGGGTCTTCATGTGTAAGGACAGACCTAACATTGCGCATTGTTGTGACCTTTCTGCGCACTATTGCGGACCTCTTTTATCTGTTGCACCTGATAATTAAGTTCAGGACCGCATATGTGGCACCCAGCTCACGGGTATTTGGCAGGGGAGAACTTGTCATGGACCCAAAGAAGATTGCAAGAAGATATTTCAGATCTGATTTCTTCATTGATTTTATTGCTACACTCCCTCTACCCCAGATGGTCATCTGGTTTATTATCCCAGCAACAAGAAGCCCTCAGACTGATCACAAGAATAATGCGCTTGCATTGATTGTTTTGCTCCAATATGTTCCAAGATTATATTTGATTTTTCCGTTAAGTTCTCAAATAATCAAAGCGACAGGAGTGGTTACGAAGACTGCTTGGGCAGGAGCTGCATATAACTTGCTGCTGTATATGTTAGCTAGCCACGTTTTAGGGGCATCTTGGTATCTTCTATCTGTGGACCGATACACTACTTGTTTGAAATCCTTTTGCAAAAAGGAACAAAATCCTGAAAATTGTTTTGGCTACCTGGACTGCAGTTCTTTGAATGTTGAGCTGCGCAAGTTATGGGCAAATAGTACTAATGTGTTTAGCAGCTGTGATCCCAATAATAAGGATATTAATTTCAAGTTTGGAATATTTGAAAATGCAGTAAAGAAACATGTTGTTTCTTCAGCCTTTATTCCAAAATACCTTTATTGTTTATGGTGGGGACTGCAACAATTAAGTTCTTATGGGCAAAACCTAGAAACTAGCACGTTTATTGGGGAAACATCATTCGCTATTGTCATTGCTATCTTAGGTCTTGTATTATTTTCCCATTTGATTGGGAACATGCAGACATATTTGCAATCTATCACTATAAGGCTTGAGGAGTGGAGGCTCAAGCGAAGGGACACAGAAGAATGGATGAAGCATCGCCAACTCCCTGAAGATTTGAGAAGTCGTGTTAGACGATTTGTTCAATATAAATGGCTTGCTACTCGTGGAGTTGATGAGGAAACCATTCTACGTGCATTACCAGCTGATCTACGCCGTGATATTCAAAGACACCTTTGCTTAGACCTTGTTAGAAGAGTTCCCTTCTTCTCACAGATGGATGATCAGCTTCTGGATGCAATATGTGAGCGGCTGGTATCGTCTCTGAGCACTCAAGGCACCTACATTGTTCGTGAGGGTGACCCCGTGACTGAAATGCTTTTTATCATTAGAGGTAGACTGGATAGTTCTACTACCAACGGTGGCCGTACTGGTTTCTTCAACTCAATCATATTGAGACCTGGAGATTTTTGTGGCGAGGAGCTTCTCTCTTGGGCGTTACTCCCAAAATCAACCATTAATTTGCCTTCTTCAACCAGGACAGTTAAAGCCATAAGTGAGGTTGAGGCTTTTGCTCTTCGGGCTGAAGACCTCAAGTTTGTTGCCAATCAATTTAGGCGCCTTCACAGTAAAAAGCTGCAGCACACTTTTCGATTTTATTCCCACCATTGGAGGACTTGGGCAGCCTGCTTTATACAGGCTGCTTGGCGCCGATATAAGAAAAGGATATCTATGAAAGACCTCGGTTTGAGGGAATCCATTCCTTCAGATGAGACAGTAGCTAGTGAGAGAGAACATGAGGACTATTCTGCCAGTTCAAATTCAGCTCAAGCTAAATTGAACCTTGGGGCAACAATTCTTGCTTCGAGATTTGCTGCTAATACACGAAGAGGAGCCTTGAAAATTAAAGATGACATGCCCAAGTTACCAAAGCCCGAAGAACCCGACTTTTCCGCCGAAGCCGATGATGATTAG 2136 0.4237 MELKKGKLVRFYSDGKKHKKSLWGAAEPPALKPSNLLPLGKNRIVETFRISGSKVFPEDHEPWRKRILDPGSEIVLKWNRVFIVSCLVALFVDPLYFYLPSVIENTGSSCVRTDLTLRIVVTFLRTIADLFYLLHLIIKFRTAYVAPSSRVFGRGELVMDPKKIARRYFRSDFFIDFIATLPLPQMVIWFIIPATRSPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSVDRYTTCLKSFCKKEQNPENCFGYLDCSSLNVELRKLWANSTNVFSSCDPNNKDINFKFGIFENAVKKHVVSSAFIPKYLYCLWWGLQQLSSYGQNLETSTFIGETSFAIVIAILGLVLFSHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMKHRQLPEDLRSRVRRFVQYKWLATRGVDEETILRALPADLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTINLPSSTRTVKAISEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRISMKDLGLRESIPSDETVASEREHEDYSASSNSAQAKLNLGATILASRFAANTRRGALKIKDDMPKLPKPEEPDFSAEADDD 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00557 711 MobiDBLite consensus disorder prediction 689 703 - -
Vian4g00557 711 CDD CAP_ED 476 607 IPR000595 -
Vian4g00557 711 Gene3D - 81 401 - -
Vian4g00557 711 ProSiteProfiles cAMP/cGMP binding motif profile. 476 606 IPR000595 -
Vian4g00557 711 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 59 704 - -
Vian4g00557 711 FunFam Cyclic nucleotide-gated ion channel 1 474 592 - -
Vian4g00557 711 Pfam Ion transport protein 78 402 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vian4g00557 711 SUPERFAMILY cAMP-binding domain-like 406 598 IPR018490 -
Vian4g00557 711 Gene3D Helix hairpin bin 404 467 - -
Vian4g00557 711 Pfam Cyclic nucleotide-binding domain 499 587 IPR000595 -
Vian4g00557 711 SUPERFAMILY Voltage-gated potassium channels 72 398 - -
Vian4g00557 711 Gene3D Jelly Rolls 474 594 IPR014710 -
Vian4g00557 711 PRINTS EAG/ELK/ERG potassium channel family signature 389 398 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian4g00557 711 PRINTS EAG/ELK/ERG potassium channel family signature 253 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian4g00557 711 PRINTS EAG/ELK/ERG potassium channel family signature 439 446 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian4g00557 711 PRINTS EAG/ELK/ERG potassium channel family signature 371 382 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian4g00557 711 PRINTS EAG/ELK/ERG potassium channel family signature 136 145 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian4g00557 711 MobiDBLite consensus disorder prediction 689 711 - -
Vian4g00557 711 SMART cnmp_10 476 607 IPR000595 -
Vian4g00557 711 FunFam Cyclic nucleotide-gated ion channel 1 403 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00557 Vian-Chr4 6614827 6623006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00557 1 710 Ion Channels AT4G30360 69.368 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00557 K05391 - gmx:100810967 1352.81