Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00556 ATGTTGATAACTGTTAGGGAAGCTTCTTGTTCTTCTCCCCTCAATTTCTGGCTTAATCGTTTCAAACCAAAACCCTCTAAACCATTCAAAACATCCATTTGCCAAGCCAGTTTCTCTGTCCAAAGAACACCCACCCATTCATGGAAAACTCGGCATCTCTCAACCTGCAGTGATGAAGCACACTTTGATCCCTTGGGTATCAACTCAAGTTTACCTTCTGCTCTGAATTCTACCTGGGAAAATCTGTTGTGCTTGTTTACACAACCATTTGAGAGTTCTTCGAGTACAGAAAAGGGAAAACCTAACAGCTCACAAGGGGTGGCAGCTGCAATAGAGAATAGTTCAATAGATTTTGGTGACTTTTTTAAAGGCCCACTTCCAGGGAAGTTTCTCAAACTTTTAGGGTTTCTTGCCTTGTCACGGCTCGGAGTTTACATACCCCTAGGTGGAGTTAATAGGGATGCTTTTGTTGGAAATTTAGATCAGAACAGTTTGTTAAGCACTTTGGACTCGTTTTCTGGTGGTGGTATTGGTAGACTCGGGGTATGCTCCCTTGGTATTGTTCCCTTCATCAATGCACAGATTGTTTTCCAGCTTCTTGCACAAATATATCCCAAATTGCAAGATCTTCAAAAGAGAGAAGGTGAGGCTGGAAGAAAGAAAATTCTGCAGTACACTCGATATGCTTCAGTCGGATTTGCCATTGTGCAGGCAATCGGCCAAGTTCTTTACCTACGTCCCTATGTCAATGACTTTTCTGTAGAGTGGCTTCTTTCTTCTGTAATCTTATTGACTCTTGGCTCTGTGTTTACAACATATATTGGGGAACGAATTACAGACCTAAAACTTGGGAATGGCACCTCTCTTTTGATATTCACGAACATTATATCCTACTTGCCAGCTTCTTTTGGTAGGACAATTGCACAAGCATTTAATGATGCTAACTACGTTGGACTTGCTACCATTATAGTGTCCTTCGTCTTTTTGGTGGTTGGTATCGTTTATGTTCAGGAAGCAGAGAGAAAAATCCCTATTAACTATGCTTCTAGATACACCAGCAAAACCACTGGACTTGAAAAGTCCGCTTACCTACCCTTTAAGGTAAATAGCTCTGGAGTAATGCCTATAATCTTTTCTACGTCGTCATTAGCTCTTCCTGGTACTTTAGCACGCTTCACTGGTTTAACTGCTTTAAAGAAGGCTGCGGTGGCATTAAATCCAGGAGGTTCCTTCTACCTTCCATTCAACATACTGTTGATAGCCTTCTTCAACTATTATTACACTTTCCTACAACTGGACCCTGATGATGTGAGTGAACAACTGAAACGACAAGGTGCTTCAATTCCACTCGTCAGACCAGGCAGAAGTACAGCTACATTTATCAAAACAGTTCTTAGTAGAATATCAGTTCTGGGTTCAACATTTTTGGCTATCTTGGCTGCTGGTCCAGCAGTTGTAGAACAGATCACTCACTTGACTGCATTTCGGGGATTTGCAGGAACTTCTGTTCTTATTCTTGTTGGTTGTGCAACAGACACGGCAAGAAAAGTTCAAGCTGAGATTATATCCCAAAAGTACAAGAACATAGAGTTCTATGATTTTGATAAATATTGA 1614 0.4114 MLITVREASCSSPLNFWLNRFKPKPSKPFKTSICQASFSVQRTPTHSWKTRHLSTCSDEAHFDPLGINSSLPSALNSTWENLLCLFTQPFESSSSTEKGKPNSSQGVAAAIENSSIDFGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNRDAFVGNLDQNSLLSTLDSFSGGGIGRLGVCSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSVEWLLSSVILLTLGSVFTTYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTIAQAFNDANYVGLATIIVSFVFLVVGIVYVQEAERKIPINYASRYTSKTTGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLTALKKAAVALNPGGSFYLPFNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGRSTATFIKTVLSRISVLGSTFLAILAAGPAVVEQITHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDFDKY 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00556 537 FunFam Preprotein translocase subunit SECY, chloroplastic 121 526 - -
Vian4g00556 537 Hamap Protein translocase subunit SecY [secY]. 118 530 IPR026593 -
Vian4g00556 537 ProSitePatterns Protein secY signature 1. 181 200 IPR030659 -
Vian4g00556 537 PRINTS Preprotein translocase SecY subunit signature 280 303 - -
Vian4g00556 537 PRINTS Preprotein translocase SecY subunit signature 465 483 - -
Vian4g00556 537 PRINTS Preprotein translocase SecY subunit signature 130 148 - -
Vian4g00556 537 PRINTS Preprotein translocase SecY subunit signature 222 245 - -
Vian4g00556 537 PRINTS Preprotein translocase SecY subunit signature 371 390 - -
Vian4g00556 537 PRINTS Preprotein translocase SecY subunit signature 254 279 - -
Vian4g00556 537 PRINTS Preprotein translocase SecY subunit signature 180 200 - -
Vian4g00556 537 PRINTS Preprotein translocase SecY subunit signature 410 432 - -
Vian4g00556 537 PRINTS Preprotein translocase SecY subunit signature 499 517 - -
Vian4g00556 537 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 122 529 IPR002208 GO:0015031|GO:0016020
Vian4g00556 537 SUPERFAMILY Preprotein translocase SecY subunit 122 520 IPR023201 -
Vian4g00556 537 ProSitePatterns Protein secY signature 2. 273 290 IPR030659 -
Vian4g00556 537 Gene3D SecY subunit domain 121 526 IPR023201 -
Vian4g00556 537 Pfam SecY 182 513 IPR002208 GO:0015031|GO:0016020
Vian4g00556 537 NCBIfam preprotein translocase subunit SecY 129 526 IPR002208 GO:0015031|GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00556 54 537 Chloroplast and Mitochondria Gene Families AT2G18710 84.091 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00556 K10956 - gmx:100810430 924.85