LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g00553	ATGATGGCTGAGAAAACCAGCAGCGGCGAGGCTAATAACTCCCTGTTGCTCCACGGGAAGTACGAGCTAGGGCGGCTACTGGGTCACGGAACGTTCGCCAAGGTGTACCACGCGCGGAACCTCAAGAGCGGAAAGAGCGTGGCCATGAAGGTGGTGGGGAAGGAGAAATTGATTAAGGTGGGGATGATGGAGCAGATGAAAAGGGAGATCTCGGCCATGAACATGGTCAAGCACCCCAGCATCGTTCAGCTCCACGAGGTCATGGCCAGCAAGTCCAAGATCTACATCGCCATGGAGCTCGTGCGCGGCGGCGAGCTCTTTAACAAGATCGCCCGCGGCCGTCTCAGGGAGGACACGGCGCGCCTCTACTTCCAGCAGCTCGTCTCCGCCGTCGACTTCTGCCACAGCCGTGGCGTCTACCACCGCGACCTCAAGCCGGAGAACCTCCTCCTCGACGAGGAGGGCAACCTCAAAGTCACCGACTTCGGCCTCAGCACCTTCTCCGAGCACCTCCGCCAGGACGGCCTGCTTCACACCACTTGCGGCACCCCGGCCTACGTGGCGCCGGAGGTCATCGGGAAAAAGGGCTACGACGGCCCCAAGGCTGATATCTGGTCTTGCGGTGTAATCCTCTATGTACTCCTCGCAGGGTTTTTACCCTTCCAGGATGACAACTTGGTCTCCTTGTATAAGAAAATTTACCGCGGTGACTTCAAGTGCCCGCCGTGGTTTTCATCCGAGGCACGCCGCCTCATTACGAAGCTCCTCGACCCGAACCCGAATAACCGAATAACGATTTCCAAGATCATGGACTCGTCCTGGTTCAAAAAGTCGGTTCCGAAGGACGTGATGGGAGCGAAGAGAGAAGAGTTGGATTTGGAAGAGAAGATTAAGCAGTTAGAAGAATCTAAGTCCACCACGATGAATGCTTTCCATTTAATTTCGCTTTCGGAGGGGTTCGATTTGTCGCCCTTGTTCGAGGAGAAGAAGAAGGAGGAGAAGGAGATTCGGTTTGCGACCACACGCACCGCGAGTAGCGTGATCTCACGGCTGGAGGAGGTGGCGAAGGCGGTGAAGTTTGACGTTAAGAAAAGCGAGAGCAAAGTGAGGTTGCAGGGTCAACAGCGGGGTCGGAAAGGGAAGCTTGCAATTGCTGCGGATTTATACGCCGTGACGCCGTCGCTTTTGGTGGTGGAGGTGAAGAAGGACAACGGTGATACCTTGGAGTACAACCAGTTCTGCAGCAACCAACTTCGTCCTGCGCTTAAAGACATCGTTTGGAGGACTTCCCCTTCTGAGAATCCTACACCTGTTTGA	1317	0.555	MMAEKTSSGEANNSLLLHGKYELGRLLGHGTFAKVYHARNLKSGKSVAMKVVGKEKLIKVGMMEQMKREISAMNMVKHPSIVQLHEVMASKSKIYIAMELVRGGELFNKIARGRLREDTARLYFQQLVSAVDFCHSRGVYHRDLKPENLLLDEEGNLKVTDFGLSTFSEHLRQDGLLHTTCGTPAYVAPEVIGKKGYDGPKADIWSCGVILYVLLAGFLPFQDDNLVSLYKKIYRGDFKCPPWFSSEARRLITKLLDPNPNNRITISKIMDSSWFKKSVPKDVMGAKREELDLEEKIKQLEESKSTTMNAFHLISLSEGFDLSPLFEEKKKEEKEIRFATTRTASSVISRLEEVAKAVKFDVKKSESKVRLQGQQRGRKGKLAIAADLYAVTPSLLVVEVKKDNGDTLEYNQFCSNQLRPALKDIVWRTSPSENPTPV	438

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g00553	438	CDD	STKc_SnRK3	20	274	-	-
	Vian4g00553	438	Gene3D	Transferase(Phosphotransferase) domain 1	103	281	-	-
	Vian4g00553	438	FunFam	Non-specific serine/threonine protein kinase	10	306	-	-
	Vian4g00553	438	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	139	151	IPR008271	GO:0004672\|GO:0006468
	Vian4g00553	438	Pfam	NAF domain	306	364	IPR004041	GO:0007165
	Vian4g00553	438	Pfam	Protein kinase domain	21	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian4g00553	438	SMART	serkin_6	21	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian4g00553	438	FunFam	Non-specific serine/threonine protein kinase	12	100	-	-
	Vian4g00553	438	CDD	CIPK_C	309	423	-	-
	Vian4g00553	438	Gene3D	Kinase associated domain 1, KA1	302	428	-	-
	Vian4g00553	438	ProSiteProfiles	NAF domain profile.	303	327	IPR018451	GO:0007165
	Vian4g00553	438	ProSiteProfiles	Protein kinase domain profile.	21	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian4g00553	438	Coils	Coil	283	306	-	-
	Vian4g00553	438	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	11	423	-	-
	Vian4g00553	438	ProSitePatterns	Protein kinases ATP-binding region signature.	27	54	IPR017441	GO:0005524
	Vian4g00553	438	Gene3D	Phosphorylase Kinase; domain 1	18	102	-	-
	Vian4g00553	438	SUPERFAMILY	Protein kinase-like (PK-like)	18	283	IPR011009	-
	Vian4g00553	438	FunFam	Non-specific serine/threonine protein kinase	303	427	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g00553	Vian-Chr4	6550002	6551318	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian4g00553	4	432	CBL-interacting serine-threonine protein kinases	AT4G30960	72.146	0.0	633

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Vian4g00553		Pkinase	2.2e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g00553	-		K07198	gmx:547644	784.252