Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00552 ATGCAGCCCTGTAGCAGAGAAATGCAAGGGATAAACTCCCTCTTCAACTCTTCTTCCCAAATCTCCCTCCAGGACCTCCACACCACCACCACCACCACCACCACCACCGCCACCAACCAGATCCAAAATTCACACATCAACCACCACCACCACCAACCACTCCAACACCATCACCAACTCCCTCACTTCGACCCAACCTCTCAGGATGACTTTCTCGACCAAATGTTCTCCTCCTGCTCCTGGCCCGACCTCAACCCAAACAAGTCCTTGTGGGACCCCAATACCCTCTCCGACCAAACCACTCCCTCCGACAACGACAATACCAATAATACTAACCATAATAATGTCGCTTTCCCCTACGACGAACCCTCCACCTTGGCCTCCAAGTTCCGCAACCACCAGATCAGCGCTTCCTCTACAAAAAACGCCGCCGCAGCTCTCATGCTCCAGCATCAACTCCTCATGTCCAGAGACTCTCCGCTCCTTCACATGCCGCTTTCCTTACCTCAAAACGACGTCGTTGACGCCTCCTCCTTCAAATCCCCCAATCCCGGCGGCGAGACTTCGGTCCAGGCTCTCTACAACGGCTTTGCCGGATCTCTGCATGGCGCCGGTCAAGCCTCCAACCAGACTCAGCATTTTCAACATCCTCAGGGAAGTTCTAATCCGATGCAAGGGCAAAATTTTGGTGCGCCGGTTACTGGGGGCGCAACGAACCAAGCTCCGGCGAGTGGCGCAGCTGCTCAGCCGAGGCAGAGGGTTCGTGCCAGGAGAGGTCAAGCCACGGACCCTCACAGCATCGCTGAAAGGTTGAGAAGGGAGAGAATCGCAGAGAGAATGAAAGCCCTACAGGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTCGCACCCCTTGTTGCTGATATGTCTTCTGAGGGTGGCGGTGACTGCATCCAAGCGAACGGCAACGCTAACCGCGGCGGTTCCCTCGCGCCAAATTCCAACAGCAACAACAACCAAACCACAGCGTCAACCTCGAACGACAGCTTGACCATGACGGAGCACCAGGTAGCGAAACTGATGGAGGAGGACATGGGTTCCGCCATGCAGTACCTTCAAGGCAAGGGCCTTTGCCTCATGCCCATTTCTCTTGCCACTGCCATCTCCACTGCCACGTGTCACACCAGGAACCCCTTGATCAACGCTGCCTCCGGTAGCACCCAGATTCCGACCAACGCCGCCCCCGGCACTCTCGTCAACCCCGCCGTGGCGTCCAACGGCGAAGGCCCGTCCTCTCCGAGCATGTCCGTGCTGACGGTGCAGTCGGCCGTGGTGGGCAACGAGGGCGCCGTGAAGGACGCTACCTCCGTTTCGAAGCCGTGA 1458 0.5686 MQPCSREMQGINSLFNSSSQISLQDLHTTTTTTTTTATNQIQNSHINHHHHQPLQHHHQLPHFDPTSQDDFLDQMFSSCSWPDLNPNKSLWDPNTLSDQTTPSDNDNTNNTNHNNVAFPYDEPSTLASKFRNHQISASSTKNAAAALMLQHQLLMSRDSPLLHMPLSLPQNDVVDASSFKSPNPGGETSVQALYNGFAGSLHGAGQASNQTQHFQHPQGSSNPMQGQNFGAPVTGGATNQAPASGAAAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQANGNANRGGSLAPNSNSNNNQTTASTSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLINAASGSTQIPTNAAPGTLVNPAVASNGEGPSSPSMSVLTVQSAVVGNEGAVKDATSVSKP 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00552 485 MobiDBLite consensus disorder prediction 90 114 - -
Vian4g00552 485 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 260 309 IPR011598 GO:0046983
Vian4g00552 485 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 258 320 IPR036638 GO:0046983
Vian4g00552 485 Gene3D - 255 317 IPR036638 GO:0046983
Vian4g00552 485 Pfam Helix-loop-helix DNA-binding domain 265 310 IPR011598 GO:0046983
Vian4g00552 485 MobiDBLite consensus disorder prediction 201 267 - -
Vian4g00552 485 MobiDBLite consensus disorder prediction 47 67 - -
Vian4g00552 485 SMART finulus 266 315 IPR011598 GO:0046983
Vian4g00552 485 MobiDBLite consensus disorder prediction 202 246 - -
Vian4g00552 485 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 79 413 - -
Vian4g00552 485 FunFam Transcription factor bHLH66 257 322 - -
Vian4g00552 485 MobiDBLite consensus disorder prediction 344 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00552 Vian-Chr4 6527680 6530956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00552 249 484 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 63.281 1.48e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian4g00552 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00552 - - gmx:100807286 624.009