Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00548 ATGCAGCAGGGTGATCCAACGGTTCTAAGCTTGAGGCCTGGCGGTGGTCGTGGCGGCGGAAGCAGGCTTTTTGCTCTCTCCTCCTCATCCTCCTCCCCTTACCCTCCCTCCGTCGATCTCCCTCTCTCGCGCCCCCATGCGTTCTTCTCTCTCAAGACCGGAGATTCACGTTTTGAGGTTCGTGAGCGTGTGCAATATACCAGAGATCAGCTTTTAGAGCTTGGCAAGGCTGTTGAAGTCCTTGATGATATTCTGAAAATTAAGCAAGATATAGGAGCTGAACTTTTTGGTGAAAATCAAAGTTGGGGTGGCCAAGCTGACAGCAATCTTCCTCATCAACTACCAAACCAGTATTCTGAGTTAGACAATCGTGATTGGCGAGGTCGTTCTGGACAACTTCCTGCTAGTCCAGATGAGAGGTCTTGGGAAAACCTCAGAGATAACAGTAGTCAGACTAATCGCCAAGACCATATTAATTCCCAGTTTGCAAGGACACAGATATCTTCTACCCAAGGGGGAGGACCTACTCCTACACTAGCCAAGGCGGAGGTTCCTTGGTCAGGCAGAAGGGGAAGTCTATCTGATAAGGATCGTGTCTTAAAGACTGTGAAAGGAATTCTGAATAAGTTAACTCCTGAGAAATTTGATGTCCTGAAGGGTCAGTTAATTGATTCTGGCATTACCTCTGCTGACATCTTGAAGGATGTCATTTCACTTATTTTTGACAAGGCTGTTCTAGAACCAACATTTTGCCCAATGTATGCTCAGCTGTGTTCTGATTTGAATGAAAAACTGCCTCCATTCCCATCTGGGGAACCTGGTGGGAAGGAAATCACCTTTAGGCGAGTATTATTGAATATTTGCCAGGAGGCATTTGAAGGTGTAGAACTAAAAAGGATGGCTGCCCCTGAGCAGGAGATGGACCGTACGGACAAGGAAAGACTGCTCAAGCTTCGGACTCTAGGAAATATCCGTTTAATTGGTGAGCTATTGAAGCAGAAGATGGTCCCTGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGACCCCCAGACAGCAAGTCTTGTCCTGCCGAGGAAAATGTTGAAGCCATATGTCAGTTTTTCAACACTATTGGCAAGCAGCTTGATGAGGGTCCTAAATCGCGCCGTATAAATGATATTTACTTTAGTCGATTGAAAGAATTGAGCTCAAATCTACAACTTGTACCCCGGATTAGGTTCATGATTCGGGATGTTCTAGAGTTACGTGCTAATAACTGGGTGCCTAGACGGGAAGAGATCAAAGCCAAAACCATTACTGAAATTCATTCAGAAGCAGAAAAGAATCTTGGTTTGCGACCAGGTGCCACTGCAAGTATGAGAAACACCCGTGGTGGTGTTCAAGGAAATTTCAGCCCCGGGGGCTTCCCTATTTCCCGACCTGGTACAGGGGGTTTGATGCCTGGAACGCCAGGGACCAGGAAGATGCCTGGGAGGCCTGGATTTGATAATAACAACTGGGAGATGCCTAAGACTAGATCTATGCCAAGAGGAGACTTCTCGGGTGTTCAAGCTGCTGGATCCAGCAGCCCTTTACTTTCCAAGTCCACAATCCTTAATTCAAAATTGCTACCTCAAGGGAGTAGTGGTATTATAAGTGGAAGAAATAGTGCCTTAGTGCATGGAGCTGCTACATCTTCTACTCGACCAGCAAACTTCAGTTTAGGCCATGAGACAGCACCTCAGCTCTCTTCACATGATAGAACTGTTGCTCCTGTTCTTGTATCCTCTGAGAAGCCACAAGCACCTGCCAGTGGATTGAATTCTAATGATCTTCGCCGCAGAACTATCTCTCTTCTAGAAGAATATTTCAGTGTTCGAATTTTGGAAGAGGCATTACAATGTGTGCAGGAATTAAAATCTCCTTCTTATCACCCTGAGGTTGTTAAGGAAGCCATTTATCTTGCACTTGATAAAAGTCCACCATGTGTTGAACCTGTAGTCAATCTCATGGAGTATCTATACATTAAGAAGATTCTTACTGTTATAGATATTGAGGCAGGCTGTTTGTTATTCGGTTCTCTGCTGGATGATATTGGCATAGATTTACCTAAAGCACCTAGTAATTTTGGTGTGATAATTGGGAAACTAATTTTGGTTGGGGGATTAGATTTTAAGGTGGCGAGAGAGATTCTCAAGAAGGTGGAAGATGACATGTACCAGAGAGCAATATTTGACAGTGCGGTAGGGACCATTAAATCTGCTGCATCCGGGCAATCAGTGTTGGATTTACAAACATCTGATATTGAGGCCTGTCAGAGTCTGCTCAAGTGA 2319 0.4498 MQQGDPTVLSLRPGGGRGGGSRLFALSSSSSSPYPPSVDLPLSRPHAFFSLKTGDSRFEVRERVQYTRDQLLELGKAVEVLDDILKIKQDIGAELFGENQSWGGQADSNLPHQLPNQYSELDNRDWRGRSGQLPASPDERSWENLRDNSSQTNRQDHINSQFARTQISSTQGGGPTPTLAKAEVPWSGRRGSLSDKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSGEPGGKEITFRRVLLNICQEAFEGVELKRMAAPEQEMDRTDKERLLKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPPDSKSCPAEENVEAICQFFNTIGKQLDEGPKSRRINDIYFSRLKELSSNLQLVPRIRFMIRDVLELRANNWVPRREEIKAKTITEIHSEAEKNLGLRPGATASMRNTRGGVQGNFSPGGFPISRPGTGGLMPGTPGTRKMPGRPGFDNNNWEMPKTRSMPRGDFSGVQAAGSSSPLLSKSTILNSKLLPQGSSGIISGRNSALVHGAATSSTRPANFSLGHETAPQLSSHDRTVAPVLVSSEKPQAPASGLNSNDLRRRTISLLEEYFSVRILEEALQCVQELKSPSYHPEVVKEAIYLALDKSPPCVEPVVNLMEYLYIKKILTVIDIEAGCLLFGSLLDDIGIDLPKAPSNFGVIIGKLILVGGLDFKVAREILKKVEDDMYQRAIFDSAVGTIKSAASGQSVLDLQTSDIEACQSLLK 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00548 772 MobiDBLite consensus disorder prediction 102 158 - -
Vian4g00548 772 SUPERFAMILY ARM repeat 194 424 IPR016024 -
Vian4g00548 772 FunFam Eukaryotic translation initiation factor isoform 4G-2 191 422 - -
Vian4g00548 772 Pfam MA3 domain 607 718 IPR003891 -
Vian4g00548 772 SMART if4_15 200 421 IPR003890 GO:0003723|GO:0005515
Vian4g00548 772 Gene3D - 192 422 - -
Vian4g00548 772 MobiDBLite consensus disorder prediction 1 39 - -
Vian4g00548 772 SUPERFAMILY ARM repeat 601 758 IPR016024 -
Vian4g00548 772 MobiDBLite consensus disorder prediction 486 526 - -
Vian4g00548 772 MobiDBLite consensus disorder prediction 102 120 - -
Vian4g00548 772 FunFam Eukaryotic translation initiation factor isoform 4G-2 600 762 - -
Vian4g00548 772 MobiDBLite consensus disorder prediction 23 37 - -
Vian4g00548 772 ProSiteProfiles MI domain profile. 606 728 IPR003891 -
Vian4g00548 772 Pfam MIF4G domain 200 421 IPR003890 GO:0003723|GO:0005515
Vian4g00548 772 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 56 768 IPR045208 GO:0003743
Vian4g00548 772 SMART ma3_7 607 719 IPR003891 -
Vian4g00548 772 Gene3D - 601 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00548 Vian-Chr4 6483493 6489034 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00548 1 770 Eukaryotic Initiation Factors Gene Family AT5G57870 61.820 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00548 K03260 - gmx:100816500 1188.71