Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00542 ATGGCCTCTGATATCTCGTTTGAGGATCTCAAGAAGAATGTTGATCTTGAAAAGATTCCAGTTGAAGAGGTGTTGAGGGATGGAAAATGGGGTGAAGAAGATGCATCAATTTTGGTACCTGGAGATATGATTAGCATCAAGTTGGGAGATATCGTCCCTGCCGATGCCCGTCTCTTGGAGGGAGATCCTCTCAAAATTGACCAAGCTGCTCTCACTGGTGAATCCTTGCCAGTCACAAGGAACCCTGGTGATGAAGTATTCTCTGGTTCCACCTGCAAACAAGGAGAAATTGAAGCTGTTGTCATTGCCACTGGTGTCAACACCTTCTTTGGCAAGGCTGCTCATCTTGTAGACAGCACCAACAATGTCGGTCACTTTCAACAGGTGTTGACGTCTATTGGCAACTTTTGTATCTGCTCAATTGCTGTGGGCATGGTGATAGAGATCATTGTCATGTACCCCATCCAGCATAGGTCTTATAGAGATGGCATTGATAACTTATTGGTGCTTCTCATTGGTGGTATTCCAATTGCCATGCCTACTGTCTTGTCTGTGACCATGGCAATTGGGTCTCACCGTTTGTCCGAACAAGGAGCCATCACCAAGAGAATGACAGCCATTGAAGAAATGGCAGGGATGGATGTTCTCTGCAGTGACAAAACTGGAACTCTCACCCTTAATAAGCTTACTGTGGATAAGAACTTGATTGAGGTCTTCCCCAGGGGTATGGACAAGGACACTCTTGTCCTATATGCAGCTAGAGCTTCAAGGACTGAAAACCAGGATGCCATTGATTCATCAATTGTGGGAATGTTAAGTGACCCTAAGGAGGCAAGAGCAGGAATCACCGAGGTGCATTTCTTGCCTTTTAATCCTGTGGACAAGCGCACTGCCATTACCTTCATTGACAACAATGGTGACTGGCACAGAAGCAGCAAAGGTGCTCCTGAGCAAATCATTGAACTCTGTGGCCTTAAAGGAGAGGTCCTGAAAAGGACACACAAGGTTATTGATGAATATGCTGACCGCGGTCTGCGTTCCTTGGGTGTTGCTCGCCAGAGTGTTCCAGAAAAGACGAAGGAGAGCGCTGGAGATCCATGGGAGTTTTTGGGTCTGCTACCTCTCTTTGATCCTCCAAGGCATGATAGTGCGGAGACCATTCGTCGTGCTATTGAACTTGGAGTCAATGTTAAAATGATCACCGGTGACCAACTTGCCATTGGCAAAGAAACCGGTCGTAGACTTGGAATGGGCACCAACATGTACCCTTCATCCTCCCTCCTTGGCGATTCCTCGGATGCAGCCCTTTCTTCAATCTCAGTTGATGAGCTCATTGAGAAGGCTGATGGATTTGCCGGAGTCTTCCCTGAGCACAAGTACGAGATTGTAAAGAGGTTGCAGGACAAAAAGCACATTTGTGGCATGACAGGAGATGGTGTGAACGATGCACCAGCACTGAAGAAGGCAGACATCGGCATTGCAGTGGATGATGCAACTGACGCAGCAAGGAGTGCCTCTGATATTGTTCTGACACAACCTGGACTCAGTGTGATTGTGAGTGCTGTGTTGACAAGCAGGGCAATTTTCCAGAGGATGAAGAACTACACAATCTACGCTGTTTCCATCACAATCCGCGTTGTGTTCGGGTTCTTGCTTGTTGCTTTAATATGGAAGTTCGACTTCTCTCCCTTCATGGTTCTCATCATAGCCATCTTGAACGACGGAACCATCATGACCATATCAAAAGACAGAGTGAAACCATCTCCTTTGCCTGATTCATGGAAACTTAACGAAATCTTTGCCACCGGAATCGTTCTTGGAGCATACATGGCCATCATGACCGCAGTCTTCTTCTACCTCGTTCATGACACTCATTTCTTTTCTGATGTGTTTGGAATACGTTCAATTGCAGAAAGCGAGGAGCAACTTAACTCTGCTCTGTACCTTCAAGTGAGTATCGTTAGTCAGGCACTCATCTTTGTCACGAGATCAAGGGGCTGGTCATATCTCGAACGACCTGGCGTGATGCTCATTGTTGCCTTCCTTTGTGCCCAACTGGTGGCCTCTGTGATTGCTGTGTATGCACATTGGGACTTTGCGAAAATCCATGGAGTTGGGTGGGAATGGGCAGGAGCAATCTGGGTCTACAGTATCATCACCTACATTCCTCTTGATATCCTCAAATTTCTCATTCGCATGGGGCTAACAAGCGGTGCTTGCGACACCACGCTCCCAAACAAGCCTTAG 2247 0.4704 MASDISFEDLKKNVDLEKIPVEEVLRDGKWGEEDASILVPGDMISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTRNPGDEVFSGSTCKQGEIEAVVIATGVNTFFGKAAHLVDSTNNVGHFQQVLTSIGNFCICSIAVGMVIEIIVMYPIQHRSYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFPRGMDKDTLVLYAARASRTENQDAIDSSIVGMLSDPKEARAGITEVHFLPFNPVDKRTAITFIDNNGDWHRSSKGAPEQIIELCGLKGEVLKRTHKVIDEYADRGLRSLGVARQSVPEKTKESAGDPWEFLGLLPLFDPPRHDSAETIRRAIELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGDSSDAALSSISVDELIEKADGFAGVFPEHKYEIVKRLQDKKHICGMTGDGVNDAPALKKADIGIAVDDATDAARSASDIVLTQPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRVVFGFLLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGIVLGAYMAIMTAVFFYLVHDTHFFSDVFGIRSIAESEEQLNSALYLQVSIVSQALIFVTRSRGWSYLERPGVMLIVAFLCAQLVASVIAVYAHWDFAKIHGVGWEWAGAIWVYSIITYIPLDILKFLIRMGLTSGACDTTLPNKP 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00542 748 Gene3D - 22 104 - -
Vian4g00542 748 Gene3D - 229 376 IPR023299 GO:0000166
Vian4g00542 748 SFLD Haloacid Dehalogenase 199 528 - -
Vian4g00542 748 Gene3D - 105 703 - -
Vian4g00542 748 Pfam E1-E2 ATPase 23 196 - -
Vian4g00542 748 CDD P-type_ATPase_H 20 729 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vian4g00542 748 PRINTS P-type cation-transporting ATPase superfamily signature 393 403 - -
Vian4g00542 748 PRINTS P-type cation-transporting ATPase superfamily signature 217 231 - -
Vian4g00542 748 PRINTS P-type cation-transporting ATPase superfamily signature 476 495 - -
Vian4g00542 748 PRINTS P-type cation-transporting ATPase superfamily signature 499 511 - -
Vian4g00542 748 PRINTS P-type cation-transporting ATPase superfamily signature 67 81 - -
Vian4g00542 748 PRINTS P-type cation-transporting ATPase superfamily signature 371 382 - -
Vian4g00542 748 FunFam ATPase 4 plasma membrane-type 466 703 - -
Vian4g00542 748 SUPERFAMILY Calcium ATPase, transduction domain A 23 117 IPR008250 -
Vian4g00542 748 FunFam Plasma membrane ATPase 229 376 - -
Vian4g00542 748 Pfam haloacid dehalogenase-like hydrolase 213 490 - -
Vian4g00542 748 SUPERFAMILY HAD-like 213 523 IPR036412 -
Vian4g00542 748 NCBIfam HAD-IC family P-type ATPase 21 236 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00542 748 NCBIfam HAD-IC family P-type ATPase 451 562 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00542 748 NCBIfam plasma-membrane proton-efflux P-type ATPase 21 694 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vian4g00542 748 PRINTS H+-transporting ATPase (proton pump) signature 476 492 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00542 748 PRINTS H+-transporting ATPase (proton pump) signature 333 351 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00542 748 PRINTS H+-transporting ATPase (proton pump) signature 448 464 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00542 748 PRINTS H+-transporting ATPase (proton pump) signature 507 532 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00542 748 PRINTS H+-transporting ATPase (proton pump) signature 648 669 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00542 748 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 733 IPR023298 -
Vian4g00542 748 PANTHER CALCIUM-TRANSPORTING ATPASE 21 739 - -
Vian4g00542 748 Gene3D - 214 513 IPR023214 -
Vian4g00542 748 FunFam Plasma membrane ATPase 20 104 - -
Vian4g00542 748 SFLD p-type atpase 199 528 IPR044492 -
Vian4g00542 748 FunFam Plasma membrane ATPase 370 524 - -
Vian4g00542 748 ProSitePatterns E1-E2 ATPases phosphorylation site. 219 225 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00542 Vian-Chr4 6445563 6449387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00542 20 747 Primary Pumps ATPases AT3G42640 83.516 0.0 1279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00542 K01535 - gmx:100798717 1278.85