Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00538 ATGGAGATTTTCAAGTGCTTCTACATCAATCTTCTTGCTACCTTCATGATATCAACAGTTTTAGCAATCGACCCTTACTCACAAGCACTTCTCAGCCTAAAAGATGAACTTGTAGATGATGATAACAGCTTGAGCAACTGGGTGGTACCCTCAGCAGGAAAATTAACTGGGAAATACTATGTGTGTTCTTGGTCAGGTGTCAAGTGTGACAATGACTCAACCACTGTAACTTCTATAGACCTTTCCATGAAGAAACTCGGAGGTGTTTTGTCAGGGAAGCAATTCAGCATCTTCACAAACCTCACTAATCTCAACCTGAGCTACAATTTCTTCTCAGGGCAGCTTCCAGCTGAGATTTTCAACCTCACCAGCCTCACAAGTTTGGACATCAGCAGAAACAATTTTTCTGGTTCCTTCCCTGGTGGAATTACTAGGCTCCAAAATTTGGTTGTACTTGATGCCTTTAGCAACAGTTTTTCAGGGTCATTACCTGCTGAATTTTCACAGCTAGCAAACCTTAAAGTTCTCAATCTAGCTGGGAGCTACTTCAGAAATTCAATTCCATCTGAATACGGTTCTTTCAAAAGCCTTCAGTTTCTTCATCTTGCAGGAAATTCTCTTTCAGGAAGTATACCTCCAGAACTGGGTAACCTCAAAACAGTGACCCATATGGAGATTGGGTACAACCTATACCAGAGTTTTATTCCACCTGAACTAGGTAACATGAGTCAGCTTCAGTATCTTGACATAGCAGGAGCAAATCTATCAGGCCACATACCAAAGCAACTCTCCAATCTCACCAGTTTGCAATCACTATTCCTTTTCAGAAACCAGCTCACAGGAACAGTGCCAAGTGAGCTCGGTAACATTGAATCCCTGGCAGATTTAGATCTCTCTGATAACTTCCTCTCAGGGTCCATTCCCGAAAGCTTCTCAATGCTAAAGAACCTAAGACTACTCAGTCTCATGTACAATGATATGAGTGGCATTGTTCCTGAAGGAATTGCTCAACTCCCATCCTTGGAAACTCTTCTCATTTGGAACAATCGCTTCTCTGGGTCACTTCCTCGGAGCTTAGGGAGGAACTCCAAACTCAAGTGGGTGGATGCTTCCACAAACAATTTAGTGGGAAGCATACCACCTGATATCTGTGTGAGTGGAGTACTATTTAAGCTAATACTGTTTTCAAACAAATTCGAAGGTGATCTCTCATCAATCTCCAACTGTTCTTCACTCGTTCGCCTTCGCCTAGAAGATAATTCATTTTCAGGAGAAATCACTTTGAAATTCAGCCATCTTCCTGATATCTTATACGTCGATCTCTCTAGAAACAACTTTGTTGGTGGCATTCCCTCCGATATTTCTCAAGCCACTCAACTGGAGTATTTTAATGTCTCTTATAATCTGAAATTAGGAGGTACCATCCCTGCACAAACGTGGTCTTTGCCCCAACTTCAAAATTTTTCAGCATCTTCTTGTGGTATTTCTGGTGATCTTCCCCTATTTGAGTCCTGCAAATCAATTTCAGTTATTGATCTGGATAACAATAACTTATCTGGGATCATCCCAAACAGTGCTTCCAAATGTCGAGCTCTTGAGAAAATCAACCTATCCTACAATAGCTTAACAGGTCATATACCTGATGAGCTTGCAAATATTCCTGTTCTTGTTGTGGTGGACCTATCAAACAACAAGTTCAATGGCCTCATACCTGCTGAGTTTGGCAGTGCTTCAAGTTTACAACTTCTGAATGTGTCTTTTAACAATATCTCCGGTTCAATACCCACAGGAAAGACATTCAAATTGATGGGAAAAAGTGCATTTATCGGAAATTCAGAGCTATGTGGAGCACCCCTGAGATCATGCCCTCATTCAGTTGGAATATTGGGCAGAAAAGGCCCGTGGAAGATTACACATATTGTGTTACTCTCTGTAGGGTTGCTAATAGTTCTTCTGGGACTAACTTTTGGAATATTTTATTTGAGAAGGGGGATAAAAAGTCAATGGAAGATGGTATCATTCGTGGGTCTCCCTCAATTCACAGCAAATGATGTTTTGACGAGCCTCACTGCCACAAAACCAACAGAAGTTACATCACCATTACCAGCAGTTACAAAGGCTGTTCTGCCGACAGGAATAACAGTTTTGGTGAAGAAGAAGGAGTGGGAAGCTAGGAGCATCAAGGTTGTGTCAGAATTCATAACGAGACTGGGAAATTCAAGGCACAAGAATTTAATCAGACTACTGGGGTTTTGCCACAACCAGCATTTAGTCTATCTTTTGTATGATTACTTGCCCAATGGGAATTTGGCTGAGAAAATGGAAATCAAATGGGATTGGGCAGCAAAATTCAGAACAGTTGTTGGAATTGCAAGGGGACTCTGCTTTCTTCACCATGAATGTTACCCAGCAATACCCCACGGAGACTTGAAGCCTACCAACGTTGTATTTGACGAAAACATGGAACCCCATTTGGCAGAATTTGGGTTCAAACAGGTTTCGAGGTTGAGCAAAGGCTCATCACCCACCATAACCAAGTGGGAAGCAGAATATGATGCTGCCACAAAAGAAGAACTGCGAATGGATATCTACAATTTTGGGGAGATGATTCTGGAAATTTTAAGTGGCGGAAGGTTGAGAAATGCAGGAGGCAGCATACACAGCAAACCATGGGAGGATCTCTTGAGAGAAATTTATAATGAGAATGAAGCAAACTCCGCAAGTTCATTGGAAGAGATTAAACTGGTTCTTGAGGTTGCTATGTTTTGCACCAGAAGCAGGTCGTCAGATCAGCCATCAATGGAAGATGTTCTGAAGCATCTGTCAGGCCTAAATCATATAGATGAAGGGCAATAA 2856 0.4177 MEIFKCFYINLLATFMISTVLAIDPYSQALLSLKDELVDDDNSLSNWVVPSAGKLTGKYYVCSWSGVKCDNDSTTVTSIDLSMKKLGGVLSGKQFSIFTNLTNLNLSYNFFSGQLPAEIFNLTSLTSLDISRNNFSGSFPGGITRLQNLVVLDAFSNSFSGSLPAEFSQLANLKVLNLAGSYFRNSIPSEYGSFKSLQFLHLAGNSLSGSIPPELGNLKTVTHMEIGYNLYQSFIPPELGNMSQLQYLDIAGANLSGHIPKQLSNLTSLQSLFLFRNQLTGTVPSELGNIESLADLDLSDNFLSGSIPESFSMLKNLRLLSLMYNDMSGIVPEGIAQLPSLETLLIWNNRFSGSLPRSLGRNSKLKWVDASTNNLVGSIPPDICVSGVLFKLILFSNKFEGDLSSISNCSSLVRLRLEDNSFSGEITLKFSHLPDILYVDLSRNNFVGGIPSDISQATQLEYFNVSYNLKLGGTIPAQTWSLPQLQNFSASSCGISGDLPLFESCKSISVIDLDNNNLSGIIPNSASKCRALEKINLSYNSLTGHIPDELANIPVLVVVDLSNNKFNGLIPAEFGSASSLQLLNVSFNNISGSIPTGKTFKLMGKSAFIGNSELCGAPLRSCPHSVGILGRKGPWKITHIVLLSVGLLIVLLGLTFGIFYLRRGIKSQWKMVSFVGLPQFTANDVLTSLTATKPTEVTSPLPAVTKAVLPTGITVLVKKKEWEARSIKVVSEFITRLGNSRHKNLIRLLGFCHNQHLVYLLYDYLPNGNLAEKMEIKWDWAAKFRTVVGIARGLCFLHHECYPAIPHGDLKPTNVVFDENMEPHLAEFGFKQVSRLSKGSSPTITKWEAEYDAATKEELRMDIYNFGEMILEILSGGRLRNAGGSIHSKPWEDLLREIYNENEANSASSLEEIKLVLEVAMFCTRSRSSDQPSMEDVLKHLSGLNHIDEGQ 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00538 951 FunFam Leucine-rich repeat receptor-like protein kinase TDR 188 292 - -
Vian4g00538 951 Gene3D Ribonuclease Inhibitor 282 385 IPR032675 -
Vian4g00538 951 Gene3D Ribonuclease Inhibitor 185 281 IPR032675 -
Vian4g00538 951 Gene3D Ribonuclease Inhibitor 386 500 IPR032675 -
Vian4g00538 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Vian4g00538 951 Gene3D Ribonuclease Inhibitor 504 622 IPR032675 -
Vian4g00538 951 SMART LRR_typ_2 338 362 IPR003591 -
Vian4g00538 951 SMART LRR_typ_2 266 290 IPR003591 -
Vian4g00538 951 SMART LRR_typ_2 553 576 IPR003591 -
Vian4g00538 951 SMART LRR_typ_2 98 122 IPR003591 -
Vian4g00538 951 SMART LRR_typ_2 194 218 IPR003591 -
Vian4g00538 951 SMART LRR_typ_2 314 337 IPR003591 -
Vian4g00538 951 Gene3D Phosphorylase Kinase; domain 1 701 762 - -
Vian4g00538 951 SMART serkin_6 704 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00538 951 Pfam Protein kinase domain 721 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00538 951 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Vian4g00538 951 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 311 942 - -
Vian4g00538 951 FunFam Leucine-rich repeat receptor-like protein kinase TDR 765 949 - -
Vian4g00538 951 FunFam Leucine-rich repeat receptor-like protein kinase TDR 311 624 - -
Vian4g00538 951 FunFam Leucine-rich repeat receptor-like protein kinase TDR 680 764 - -
Vian4g00538 951 SUPERFAMILY RNI-like 283 596 - -
Vian4g00538 951 FunFam Leucine-rich repeat receptor-like protein kinase 26 187 - -
Vian4g00538 951 Gene3D Transferase(Phosphotransferase) domain 1 763 950 - -
Vian4g00538 951 Pfam Leucine rich repeat 292 351 IPR001611 GO:0005515
Vian4g00538 951 SUPERFAMILY Protein kinase-like (PK-like) 704 945 IPR011009 -
Vian4g00538 951 Pfam Leucine rich repeat N-terminal domain 28 70 IPR013210 -
Vian4g00538 951 SUPERFAMILY L domain-like 59 381 - -
Vian4g00538 951 ProSiteProfiles Protein kinase domain profile. 669 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00538 Vian-Chr4 6394119 6397355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00538 7 942 Receptor kinase-like Gene Family AT5G51350 54.219 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian4g00538 Pkinase 3.8e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00538 - - gmx:100782323 1590.47