Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00527 ATGGCTGGAATGCTTCCAGGAGTTGAATGTGCACGAAGAAGAAGATTCCATAGTTGCTTGGATTCAAACTCAACTTCTTTAGCTTCACATGTATCCACAAGGCGCTCTTCTTTTGGTTTGTATGCAAGTAACTTTTCCTTGTCCACTTCACAGCAAAGAGGCATGTTATACCATACACACCCAGATGAGGATATGGCAGGAGCTGCCAGAGAAGCCAGACAGAGATTGGATGACAAGTTCAGAGCACAAAGGATGTCAGATAACAAAAGGCAAAAGAGTACAACATGTGTGGAGGGTGGAAGAACAAGCATAACAGAGTTGCACACAGAGGTATATGGGTCAAAGAAAAGTGGTGCAAGGAAATTCAGTTGGAGTAGATGGAGCTGGAAGGCCTCTGAACAAGAGGACTGTGCAGTGTGCTTGGAATCATTTAGGGTCGGAGAGACACTGATCCATCTTCCTTGTGCACATAAGTTCCATGACAGATGCTTGAAACCATGGTTGGAAAATAATTCTCATTGTCCATGTTGCAGAACAACCATTCTTTCCCTCTCTCTTTAA 561 0.4367 MAGMLPGVECARRRRFHSCLDSNSTSLASHVSTRRSSFGLYASNFSLSTSQQRGMLYHTHPDEDMAGAAREARQRLDDKFRAQRMSDNKRQKSTTCVEGGRTSITELHTEVYGSKKSGARKFSWSRWSWKASEQEDCAVCLESFRVGETLIHLPCAHKFHDRCLKPWLENNSHCPCCRTTILSLSL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00527 186 SMART ring_2 137 177 IPR001841 -
Vian4g00527 186 ProSiteProfiles Zinc finger RING-type profile. 137 178 IPR001841 -
Vian4g00527 186 Pfam Ring finger domain 136 178 IPR001841 -
Vian4g00527 186 SUPERFAMILY RING/U-box 124 182 - -
Vian4g00527 186 CDD RING-H2_PA-TM-RING 136 178 - -
Vian4g00527 186 FunFam Zinc finger family protein 111 183 - -
Vian4g00527 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 183 IPR013083 -
Vian4g00527 186 PANTHER SI:CH211-59O9.10 9 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00527 Vian-Chr4 6232799 6234180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00527 1 81 C3H Transcription Factor Family AT2G15580 48.421 1.66e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00527 - - gmx:100527583 322.013