Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00524 ATGTGTGTGCAGGATGCAGAGAAAGATATGGATAACAACTCAACAAATTCATGGCCTTTGCATTGTCACCTTTTGCTCGCCACCCACACGGACAAAAAAGGATCTTTTTTCACAACTTCAACTCCTGACACCACAGATACCACTGTCCAAAGTTCCTTTCCTCTAGAAAGCATTTATGAGGACGAAGTGATTGCAGAAAAGAAAGAAAATCAGATGAATTTGACCCCGGCTCTTCGATCTGGAGAGTGGTCTGACATAGGAGAACGCCCTTACATGGAGGACACTCATATATGCATTGGAGACTTGGCAAAGAAATTTAATTATAATGCACTTCCTGGGGAAGCTGTTTCCTTTTATGGCGTATTTGATGGACATGGAGGGAAGAGTGCTGCGCAATTTGTACGTGATAATCTGCCAAGATTTATTGTTGAGGATGTTAACTTTCCTTTGGAGCTTGAGAAGGTGGTCAAAAGGTCATTTTTGGAGACTGACGCTGCATTTCTAAAATCATCCTCTCAGGAGCCTTCCCTTTCTTCTGGCACAACTGCTTTAACCGCAATTGTATTTGGAAGGTCTTTACTTGTAGCTAATGCGGGAGACTGTCGAGCTGTCTTGTCCCGCCATGGAAGGGCCATAGAAATGTCTAAAGATCATAGGCCAAACTGTGTCAATGAAAGAACACGGGTTTTGTCCCTAGGTGGCTTCATTGACGATGGTTACCTGAATGGGCAGTTAGGTATCACTCGTGCTATTGGAGACTGGCACCTTGAAGGAATGAAGGGAACGAGTGGAAGAGAAGGACCACTGAGTGCTGAACCTGAACTTAAAATGATGACATTGACCAAAGAAGATGAATTCTTGATAATTGCTAGTGACGGAATATGGGATGTTTTTAGTAGCCAAAATGCTGTGGATTTTGCTAGGAGGAGGCTACAAGAGCACAATGATGAGAAACTATGCTGCAAGGAAATAGTGCAGGAAGCAATGAAGAGAGAATCAACTGATAACTTGACAGTTGTGATGGTATGTTTTAACTCAGATCCTCCAACACCTGTGGTTGTGGAAAGAACACGAGTAAGAAGAAGCATATCTGCAGAAGGACTTCAGAATCTAAGATCCCTGCTAAAAGAATAA 1134 0.4277 MCVQDAEKDMDNNSTNSWPLHCHLLLATHTDKKGSFFTTSTPDTTDTTVQSSFPLESIYEDEVIAEKKENQMNLTPALRSGEWSDIGERPYMEDTHICIGDLAKKFNYNALPGEAVSFYGVFDGHGGKSAAQFVRDNLPRFIVEDVNFPLELEKVVKRSFLETDAAFLKSSSQEPSLSSGTTALTAIVFGRSLLVANAGDCRAVLSRHGRAIEMSKDHRPNCVNERTRVLSLGGFIDDGYLNGQLGITRAIGDWHLEGMKGTSGREGPLSAEPELKMMTLTKEDEFLIIASDGIWDVFSSQNAVDFARRRLQEHNDEKLCCKEIVQEAMKRESTDNLTVVMVCFNSDPPTPVVVERTRVRRSISAEGLQNLRSLLKE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00524 377 SMART PP2C_4 69 342 IPR001932 -
Vian4g00524 377 Gene3D - 60 348 IPR036457 -
Vian4g00524 377 FunFam Probable protein phosphatase 2C 22 63 347 - -
Vian4g00524 377 CDD PP2Cc 79 344 IPR001932 -
Vian4g00524 377 ProSiteProfiles PPM-type phosphatase domain profile. 79 344 IPR001932 -
Vian4g00524 377 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Vian4g00524 377 Pfam Protein phosphatase 2C 91 336 IPR001932 -
Vian4g00524 377 SMART PP2C_SIG_2 94 344 IPR001932 -
Vian4g00524 377 SUPERFAMILY PP2C-like 72 346 IPR036457 -
Vian4g00524 377 PANTHER PROTEIN PHOSPHATASE 2C 66 342 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00524 Vian-Chr4 6211096 6214117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00524 60 375 PP2C-type Phosphatase Gene Family AT2G25620 57.862 1.28e-129 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vian4g00524 PP2C 3.1e-68 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00524 K14803 - gmx:100813157 629.017