LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g00500	ATGACGTCATGTTCGGGTCAGGGCAGCAGCGGGAGCAGCAGGACCCGTGTGGGGAAGTACGAGTTGGGTCGGACCCTGGGTGAGGGCAATTTCGCCAAGGTGAAGTTCGCTAGGCACGTGGAAAGCAGAGAGAACGTGGCCATCAAGATTCTCGACAAGGAGAAAGTTCTCAAGCACAAAATGATTGACCAGATAAAACGGGAAATATCCACAATGAAACTTATTAGACATCCAAATGTCATACGTATGCATGAGGTAATGGCTAGCAAAACAAAGATATACATTGTATTGGAATTTGTTACTGGTGGAGAGCTGTTTGATAAAATTGCACGCAGCGGGAGGTTGAAAGAAGATGAAGCAAGAAAATATTTTCAACAGCTTATATGTGCTGTGGATTACTGCCATAGTAGAGGTGTTTTTCATAGAGACTTAAAGCCTGAGAATTTGTTGCTGGATGCTAATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCATTGCCTCAACAAGTTCGGGAAGATGGGCTACTTCACACAACATGCGGTACGCCAAATTATGTTGCCCCAGAGGTGATTCACAACAAAGGTTATGATGGTGCAAAGGCAGATCTGTGGTCATGTGGTGTTATTCTCTTTGTTTTAATGGCAGGCTATTTGCCCTTTGAAGAAACCAATCTAACGGCTTTATATAAAAAGATTTACAAGGCTGAGTTCACGTCTCCTCCATGGTTCTCTTCAAGTGCAAAGAAACTAATCAACAGAATACTTGATCCAAATCCTGCCACTAGGATTACATTTGCTGAGGTCGTTGAGAATGATTGGTTCAAGAAGGGATATAAGCCTCCCGTATTTGAACAGCCTGCTGTTAGTCTTGATGATGTAAATTCTATTTTCAGCGAATCTTTGGATTCGAAAAATCTTGTAGTTGAGAGGCGTGAAGAGGAGGGGCATGTGGCACCAGTGACAATGAATGCCTTTGAGCTTATATCTAAATCTCAAGGTCTCAACCTTAGTAGTCTGTTTGAGAAGCAAATGGGACTTGTTAAAAGGGAAACACGATTCACTTCCAAATGTTCAGCAGATGAAATAATTTCAGAAATTGAGAAAGCTGCAGGACCCCTGGGTTTTGATGTTAAGAAGAACAACTGTAAGTTAAAGATTCAAGGGGAAAAGACTGGACGGAAAGGTCATCTGTCTGTAGCCACTGAGATCTTAGAGGTAGCCCCTTCGCTATACATGGTTGAGCTGCGTAAGTCTCAAGGAGATACTCTGGAATTTCACAAGTTCTACAAAAATCTTGCTACTGGACTGAAAGACATTGTTTGGAAAGCTGAGCCTATCGATGGAGGAAAGGACGGAGGAAAAGATGAAGGAAAGGATGGAGGAAAGGATGGTGCCAAACCATCAAAATAA	1413	0.4246	MTSCSGQGSSGSSRTRVGKYELGRTLGEGNFAKVKFARHVESRENVAIKILDKEKVLKHKMIDQIKREISTMKLIRHPNVIRMHEVMASKTKIYIVLEFVTGGELFDKIARSGRLKEDEARKYFQQLICAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIHNKGYDGAKADLWSCGVILFVLMAGYLPFEETNLTALYKKIYKAEFTSPPWFSSSAKKLINRILDPNPATRITFAEVVENDWFKKGYKPPVFEQPAVSLDDVNSIFSESLDSKNLVVERREEEGHVAPVTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSKCSADEIISEIEKAAGPLGFDVKKNNCKLKIQGEKTGRKGHLSVATEILEVAPSLYMVELRKSQGDTLEFHKFYKNLATGLKDIVWKAEPIDGGKDGGKDEGKDGGKDGAKPSK	470

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g00500	470	CDD	STKc_SnRK3	19	274	-	-
	Vian4g00500	470	FunFam	Non-specific serine/threonine protein kinase	11	99	-	-
	Vian4g00500	470	MobiDBLite	consensus disorder prediction	445	470	-	-
	Vian4g00500	470	Gene3D	Kinase associated domain 1, KA1	317	443	-	-
	Vian4g00500	470	Gene3D	Phosphorylase Kinase; domain 1	9	99	-	-
	Vian4g00500	470	FunFam	Non-specific serine/threonine protein kinase	317	443	-	-
	Vian4g00500	470	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	139	151	IPR008271	GO:0004672\|GO:0006468
	Vian4g00500	470	SMART	serkin_6	20	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian4g00500	470	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	12	428	-	-
	Vian4g00500	470	FunFam	Non-specific serine/threonine protein kinase	13	316	-	-
	Vian4g00500	470	Gene3D	Transferase(Phosphotransferase) domain 1	100	282	-	-
	Vian4g00500	470	ProSiteProfiles	NAF domain profile.	318	342	IPR018451	GO:0007165
	Vian4g00500	470	ProSitePatterns	Protein kinases ATP-binding region signature.	26	49	IPR017441	GO:0005524
	Vian4g00500	470	Pfam	Protein kinase domain	20	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian4g00500	470	CDD	CIPK_C	324	439	-	-
	Vian4g00500	470	SUPERFAMILY	Protein kinase-like (PK-like)	17	291	IPR011009	-
	Vian4g00500	470	Pfam	NAF domain	320	380	IPR004041	GO:0007165
	Vian4g00500	470	ProSiteProfiles	Protein kinase domain profile.	20	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g00500	Vian-Chr4	5861761	5869211	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian4g00500	3	445	CBL-interacting serine-threonine protein kinases	AT1G01140	67.929	0.0	638

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Vian4g00500		Pkinase	1.3e-74	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g00500	-		-	gmx:100788746	825.854