Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00499 ATGAAAAGAAGAACCGAAATAATTGTTTCTTTCTACCCCTTCGTCAATATTTTGAGAAGAAATAGAGATACACAAATAAATAAGAAGAAAGATGCAATCTATGTTGCGGTGATATCCCTTTTCAGCCAATCAAATTTCCAATATATGCATACGTGTCATGCCTCAATGGTATGGCATCTCCATAATACCACACCCTTTACCCTATCCGTTCTTCTCTCTCTATATGCCTCACTCTCTCTTTCTCTCTCTTCACTCTCCGCCATGCCCCCAGCCGCCGGAGCCGTCGCGTTGCACTCTTCCCTTTGCTCCACCGCTTCTGAGAAACCGTATTCTCCTCTAAGATCAACCCTTCTGCATGTGGCACCCAAACCCAAAAGCCTCCTCCAAAGTCACCCACTTTACCCTCCAACCCACGCCAAACTCTCCCTTGAATTCAAAGAGAAAATTCTCTGCCTTGAGGTAATGGGTATTGATGCAGGCAAAGCACTCTCCCAAAACCCCGATCTTCGCACAGCCACCATGGAATCCATACAGTCCATCATCACCTTCCTTTTCTCCAATGGCATTCTTGAGAAGGACCTGCCCAGAATCTTTGGCATGTGCCCCAAGATTCTCACTGCTGACATCAAAACTGATCTCACCCCAGTTTTTGATTTCATCTTGAATGAACTCAAAGTCCCCGAAAATAGCTTCAGGAGGGTGATCAATAAGTGCCCAAGATTGCTTACATCCAGTGTTAAAGACCAGCTCAGGCCAGCTTTGGTTTACCTAAGGAGACTTGGATTCAAGGATTCGGGGGCCTTGGCTTATCAAGATTCTGTTCTCTTGGTGTCTAATGTAGAACACACCCTCATCCCTAAACTTAGGTTTTTGGAGACTTTGGGACTTTCCAAGGATGAGATTAGGAATATGGTGTTGAGATGCCCGGCACTGCTCACTTTCAGTATAGAGAATAATTTTCAGCCAAAGTATGACTATTTTGCTGGGGAAATGGGGAGAAAAGTGGAGGAGCTGAAAGAGTTTCCTCAGTACTTTGCTTTTAGTTTGGAAAACAGGATAAAACCTAGACACACCGAGGTTGTGCAGAGTGGGATCACTTTACCTTTGTCAGTGATGCTTAAAAGCACTGATGAAGAATTTAGGGAGCTGTTAAAGCAGGGATGTGGGTGA 1170 0.4462 MKRRTEIIVSFYPFVNILRRNRDTQINKKKDAIYVAVISLFSQSNFQYMHTCHASMVWHLHNTTPFTLSVLLSLYASLSLSLSSLSAMPPAAGAVALHSSLCSTASEKPYSPLRSTLLHVAPKPKSLLQSHPLYPPTHAKLSLEFKEKILCLEVMGIDAGKALSQNPDLRTATMESIQSIITFLFSNGILEKDLPRIFGMCPKILTADIKTDLTPVFDFILNELKVPENSFRRVINKCPRLLTSSVKDQLRPALVYLRRLGFKDSGALAYQDSVLLVSNVEHTLIPKLRFLETLGLSKDEIRNMVLRCPALLTFSIENNFQPKYDYFAGEMGRKVEELKEFPQYFAFSLENRIKPRHTEVVQSGITLPLSVMLKSTDEEFRELLKQGCG 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00499 389 Gene3D Transcription termination factor 3, mitochondrial 220 386 IPR038538 -
Vian4g00499 389 SMART mt_12 335 366 IPR003690 GO:0003690|GO:0006355
Vian4g00499 389 SMART mt_12 302 334 IPR003690 GO:0003690|GO:0006355
Vian4g00499 389 SMART mt_12 232 263 IPR003690 GO:0003690|GO:0006355
Vian4g00499 389 SMART mt_12 195 227 IPR003690 GO:0003690|GO:0006355
Vian4g00499 389 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Vian4g00499 389 FunFam Transcription termination factor MTEF1, chloroplastic 220 388 - -
Vian4g00499 389 PANTHER CGI-12 PROTEIN-RELATED 65 383 IPR003690 GO:0003690|GO:0006355
Vian4g00499 389 Pfam mTERF 152 264 IPR003690 GO:0003690|GO:0006355
Vian4g00499 389 Pfam mTERF 275 380 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00499 Vian-Chr4 5859215 5860384 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian4g00499 mTERF 9.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00499 K15032 - gmx:100788221 530.791