Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00495 ATGGGGGTTATGGGGATTGTGGGGGTTTCGGTTATGATTCTGCAGTGCGATGTTGCTGAAACTCTTTTAAATTTGTGGTTTTGGGTTGAAGGGTGGTTGTGGCAATCGGTCATGAGAAACGGGGTTGGTTTTTGTAATTATGATGATAAGTTGAAGGGTGATGCGATGAGGCAGGCTTTTGATCCTTCTTCTTTGGGTCCTTCCAAGATTCCATCTATAAAAATACCTGGAAAATTGGGGAATGGTACGTGGGAGGCTTTGTCTGGATCTGATTCCTACCATGCTTCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTACTTCCGCATGAAAAATTGAACTTGAATGAAACTGAAAATGGTTATCAATCTGTTGATGACATCTCATCTGAATTTAAGAAGCTCCATCAAGATGCAGAGGGAGATGGTTCACTTGAAGATGGTGGTACTCATGCTGTTGGACCTGTGCTTCCTGATGACGAGGAGGAGCTTTTAGCCGGCATAATGGATGATTTTGACCTTAGTGGATTGCCTGGATCCCTTGAGGACTTGGAAGAGTATGATCTGTTTGGTAGTGGTGGAGGTATGGAACTAGAAACTGATCCGCAGGAAGGTCTCTCTGTGGGTATTTCTAAGTTAAGCTTTGCTGATAGTACTGTTGGCAATGGTTTGCCTCATTATTCTTTTCCTAATGGTGTGGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTATTTGTTCGTAATATTAACAGTAATGTGGAGGACTCGGAGCTGAGAGCACTTTTTGAGCTATATGGTGATATTAGAACCCTATATACTGCATGCAAACATCGGGGTTTTGTTATGATATCCTATTATGACATCCGTGCTGCTAGAACAGCTATGCGAGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTGGATATTCACTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATAAACCAAGGAACATTGGTAGTTTTCAATCTGGATCCATCGGTTTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTCATTGAATTTTATGACGTCAGAGCTGCAGAAGCAGCTCTGAAATCATTGAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTCGAAGAAATTTGATGCTCCAGTTGAACCAAGAGCTTGATCAAGATGAATCTCGGAGTTTCCGATATCAAGTGGGTTCACCTGTAGCTAACTCTCCTCCAGGTAACTGGTTACAGTTCAATAGCCCTGTTGAGCAGAATTCAATGCAAAATATCAGTCATTCTCCTGGTTCTAGAATTCTGAGCCCAACAACTGGCAATCATTTACCTGGATTAGCTTCAATTTTACAACCACAGGTATCTAATACTGTGAAGGCTGCTGCTATTGGCAATGACTTGGGAAGAAGCAGTCAAGGAGAGCACATATTTACTGGTTTGAGTTCTTCACAAGGAGCTAGTTTTCAATCACATTCGCTCCCTGAGCCAAAATTCAGCCAGTATCGTGGAGCGTTGTCCTCATTTGCGCCATCAACATCAAATGGATCCTCAGTGGAAACTTTGTCAGGGCCACAGTTTCTATGGGGAAGCCCAACCCTCTACTCGGAGCATACCAAACCTTCAGCTTGGCCAAGATCATCTGTGGGGCATCCATTTACATCGAATGGAAAGAGCCATGCCTTCCCATTTTCTACTCAGAATGGCTCTTTTGTTGGTTCATCACAGCATCATAACAATCATCACGTTGGCTCTGCTCCATCCGGTTTGCCTTTTGAGAGACACTTTGGTTTCCATCCCGAGTCATCTGAAACATCATTCATGAATAATGTTGGTTATGGAGGCATGAGTTTAGGGCACACAGATGGAAATTACATGGTTAATGTGGGTGGATCTGTTAATGCTAACATTACTATCCCAAGAAATATATCTGATAATGGGTCATCAAACTTCAGAATGAGATCTCCCAGGCTTAGCCCTGTGTACTTGGGAAATGGTCCTTATCCAGGACTTTTACCTTCCACTTTGGAGGGTTTGGCTGATCGTGCTCGGGGTAGATGGATAGAGAACAATGTGAGCCAGGCTGATAGCAAGAAGCAATTTCAGCTTGATTTGGATAAAATTAAAAGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATTCCAAACAAATACACCTCAAAAATGTTATTAGCCGCCATTGATGAAAATCACAGGGGTACTTACGATTTTCTCTACCTGCCAATTGACTTTAAGAATAAATGCAACGTCGGCTATGCATTCATCAATATGCTGTCACCTTCTCTTATTATTCCATTCTACGAGACATTCAACGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATTCAAGGAAAGACCGCCCTTGTGAGCCACTTTCAAAATTCAAGTTTGATGAATGAAGATAAGCGATGTCGTCCTATTCTTTTCCACTCAGAGGGTTCTGAAGCTGGTGATCTGATTGTGCAAGAGCATCTTCCCGCCAACCCCAACAATGTAAACATTCAGGGACTAAGGTCAAGTGAGTTACATTCAAGTGATTTTGCAGGGAGCCCTCCAAACACAGGCCCTTCTGCAAACTTGGATGCAAAATAG 2748 0.4265 MGVMGIVGVSVMILQCDVAETLLNLWFWVEGWLWQSVMRNGVGFCNYDDKLKGDAMRQAFDPSSLGPSKIPSIKIPGKLGNGTWEALSGSDSYHASSDASLFSSSLPVLPHEKLNLNETENGYQSVDDISSEFKKLHQDAEGDGSLEDGGTHAVGPVLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQEGLSVGISKLSFADSTVGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFELYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPVANSPPGNWLQFNSPVEQNSMQNISHSPGSRILSPTTGNHLPGLASILQPQVSNTVKAAAIGNDLGRSSQGEHIFTGLSSSQGASFQSHSLPEPKFSQYRGALSSFAPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSAWPRSSVGHPFTSNGKSHAFPFSTQNGSFVGSSQHHNNHHVGSAPSGLPFERHFGFHPESSETSFMNNVGYGGMSLGHTDGNYMVNVGGSVNANITIPRNISDNGSSNFRMRSPRLSPVYLGNGPYPGLLPSTLEGLADRARGRWIENNVSQADSKKQFQLDLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKTALVSHFQNSSLMNEDKRCRPILFHSEGSEAGDLIVQEHLPANPNNVNIQGLRSSELHSSDFAGSPPNTGPSANLDAK 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00495 915 FunFam Protein MEI2-like 1 333 428 - -
Vian4g00495 915 Pfam RNA recognition motif 2 749 845 IPR007201 -
Vian4g00495 915 CDD RRM2_MEI2_like 333 403 - -
Vian4g00495 915 MobiDBLite consensus disorder prediction 894 915 - -
Vian4g00495 915 SMART rrm1_1 335 403 IPR000504 GO:0003723
Vian4g00495 915 SMART rrm1_1 751 827 IPR000504 GO:0003723
Vian4g00495 915 SMART rrm1_1 250 318 IPR000504 GO:0003723
Vian4g00495 915 CDD RRM3_MEI2_like 752 837 IPR034454 -
Vian4g00495 915 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 322 IPR000504 GO:0003723
Vian4g00495 915 FunFam MEI2-like protein 5 isoform 2 238 332 - -
Vian4g00495 915 Gene3D - 333 432 IPR012677 -
Vian4g00495 915 PANTHER RNA RECOGNITION MOTIF-CONTAINING 96 867 - -
Vian4g00495 915 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 407 IPR000504 GO:0003723
Vian4g00495 915 MobiDBLite consensus disorder prediction 894 909 - -
Vian4g00495 915 CDD RRM1_MEI2_like 248 324 IPR034453 -
Vian4g00495 915 MobiDBLite consensus disorder prediction 135 154 - -
Vian4g00495 915 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 336 401 IPR000504 GO:0003723
Vian4g00495 915 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 315 IPR000504 GO:0003723
Vian4g00495 915 SUPERFAMILY RNA-binding domain, RBD 751 835 IPR035979 GO:0003676
Vian4g00495 915 Gene3D - 238 332 IPR012677 -
Vian4g00495 915 SUPERFAMILY RNA-binding domain, RBD 246 409 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00495 Vian-Chr4 5816242 5822338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00495 244 442 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 3.43e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00495 - - gmx:100800877 1596.25