Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00492 ATGAATTTGTATATGTGCGTGTTTCAGAATATGGGTCGTCCAAAATTGATTTTGAAACCCATCACAAATGGGAGAGATCGTGATTTGGCTTTGATGAAGAGAAAGAAGGCATTATTGAAGACAATATCTGAATTTTGTAGTGTGTGTGGAGTGAAAGCTTGTTTGATTATGTATGATGGCAAAGGTGATTCTCCACCATTGACTTGGCCCCAAGACCCCATTGAGATGCACTCCATCATTCAAAGGTATGAGCGTATGGTGTATGAGAAAATTCCTAAGAACTTTGATCTCAATAACTTTTTTGAGACGAGGAAGAACATGGTTGACAGTGAGATTGCCAAAGTTCAGAAAGAGATCCTTGAGACCAAATATCCCACTTGGCATCCATGCTTCAACAACCTTGGTGCTGAAGAATTGAAGAATTTCATAGCTAGATTGGACAGTAAGCTTGAAGCATGTAATAAACGAACAGTAACGGTCAAATGCAAGAAACAAGATGAAGCCCAATTCAATTTCAAGCAATGCCTGATTCAACCAGAATGTGTTGCTCCAAATCCAACCCAACTGGTTTTCATGAAGGATATTCTCCAAAACCAACTTCCTTTTGCTCCAATGAACCCACTTAATGGTAACCTTGCACCACCTTTCCAACACAATTCTGAAAAAGGCTCTAGTTCTCAATCCCCAAAGCTTAACTTTGATCCAAATCTCATGCAATTGAAGGAAGAGAACAAAGGAGTGGTGGATACATCCAATGCATGCCAAACTGATGTGCTTAAAAATCCTTCAAATAAATTTGATGTGCCTTATGATTTTCTTGATGAGTCCCTTAATCTTTTTGACCAACTTGGTGAAATACAAAGCTTGAATCAACATTGGGGGAATAATCAACAGGATGCACTTGCGGTTGGAGGAAGTATCACAACAATGAATGGTGGTGTTACTGATGATACAAATTTTCATGGAAATCAATACAATACAGAGACCTCTCTTTGCAATTACAATGGAGTTATGCAATCCTATAACTATGACGCATCATGGCAGGATATTGGTTTTCAGCAACAGAATCTGCAGCAAATGGTAACTTTACCTTCATTTCAACCATCAGTAGATAAATTCAAGCACATCACCACAACAGAGAGCTTAAAATTCTGTTATCCTAACATATGA 1170 0.3829 MNLYMCVFQNMGRPKLILKPITNGRDRDLALMKRKKALLKTISEFCSVCGVKACLIMYDGKGDSPPLTWPQDPIEMHSIIQRYERMVYEKIPKNFDLNNFFETRKNMVDSEIAKVQKEILETKYPTWHPCFNNLGAEELKNFIARLDSKLEACNKRTVTVKCKKQDEAQFNFKQCLIQPECVAPNPTQLVFMKDILQNQLPFAPMNPLNGNLAPPFQHNSEKGSSSQSPKLNFDPNLMQLKEENKGVVDTSNACQTDVLKNPSNKFDVPYDFLDESLNLFDQLGEIQSLNQHWGNNQQDALAVGGSITTMNGGVTDDTNFHGNQYNTETSLCNYNGVMQSYNYDASWQDIGFQQQNLQQMVTLPSFQPSVDKFKHITTTESLKFCYPNI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00492 389 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Vian4g00492 389 MobiDBLite consensus disorder prediction 212 233 - -
Vian4g00492 389 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Vian4g00492 389 MobiDBLite consensus disorder prediction 208 233 - -
Vian4g00492 389 SUPERFAMILY SRF-like 11 93 IPR036879 GO:0003677|GO:0046983
Vian4g00492 389 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 61 IPR002100 GO:0003677|GO:0046983
Vian4g00492 389 Coils Coil 136 156 - -
Vian4g00492 389 Gene3D - 24 107 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00492 Vian-Chr4 5760386 5761555 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00492 11 206 Type I MADS-box Gene Family AT5G55690 27.536 1.53e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian4g00492 SRF-TF 6.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00492 - - vra:106760100 723.776