LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g00464	ATGGATCGAGAAAATGGCGACGGTGACATTGAAGGCGGTGGCGGCGATGATGGTTTTCGCTCGGGCCGCAAGTATCGTCCTGTCTTGGCCAATGATCGCGCGGTACTCGAAATGTCTTCCATAGATCCGGGATCTACTTCTTCTTCCACTTCTGCTTTTACAGATATTCCTTCTAATCTCAGAAAAGTGAAAACTAGTCTTAGTGGGAGTTCGGATGCTAAAGAAGGCAACGCTTCTCATCAACAGCAACCTAATGGATCCCAGCAGCAGGAATCTAAATTGGAACTGTTCGGTTTTGACTCTCTTGTCAACATTCTTGGTCTCAAAAGTATGACTGGTGAGCAGGTTGCACAACCATCAAGTCCTAGAGATGGTGAGGATATATCTATCACTGCTGGCTTGCCAAAGCCTGCTGCTCCCAAACTTGGTACATTGATGGGTGTATTTATTCCATGTATTCAAAGCATTTTGGGCATCATCTACTACATTCGTTTCTCTTGGATTGTTGGCATGGCTGGCATAGGACAAACATTGTTGCTTGTTTCTTTATGTGGCACCTGTACATTCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGTGCCATGAAGGGTGGGGGACCTTACTATCTAATAGGTCGAGCCCTTGGTCCTGAAGTTGGAGTTAGCATTGGTCTATGCTTCTTCCTTGGAAATGCTGTTGCTGGAGCACTTTATGTATTGGGAGCTGTAGAAACATTTTTGAAAGCAGTTCCTGCTGCTGGGATCTTTAGAGAGGCTGCCACACAAGTTAACGGGACTGCAGTTACACAACCAATAGAGAGTCCAAGTTCTCATGACTTGCAAATATATGGGATTGTTGTGACTATTTTGTTATGCTTTATTGTATTTGGAGGTGTGAAGATGATAAATCGGGTTGCACCTGCTTTTCTCATACCTGTTTTATTTTCAGTCGTCTGCATATTTTTGGGAATTTTTGTGGCAAGGAAGGACCATCCCACAGAGGGAATTACTGGGCTGAATTCACAGACATTTAGAGAAAATTGGAGTTCAGATTATCAAAAGACTAATAATGCTGGAATTCCACAAACTGATGGCTCGGTAACCTGGGATTTCAATTCATTGGTAGGCCTCTTTTTCCCTGCTGTGACGGGAATAATGGCGGGTTCTAACCGATCATCCTCTCTGAAAGATACTCAGCGATCAATTCCTGTTGGAACTTTAGCAGCAACTCTTGCAACTACTTGTCTGTATTTTATTTCTTTGGTTCTGTTTGGCTCTGTTGCCAGCAGAGAGAAGCTTTTAACTGACAGGCTACTCACAGCTACAGTTGCCTGGCCTTTTCCTTCATTAATTAAAATTGGAATTATTCTTTCGACTATGGGTGCTGCTCTTCAGAGCCTGACTGGTGCCCCGCGTTTGCTTGCAGCGATAGCCAATGATGATATTTTACCTATTTTGAATTACTTTAAAGCTGCAGATGGCGGTGAACCACATGTTGCTACCCTTTTTACTGCTTTCTTGTGTATTGGATGTGTCATTATTGGGAATCTGGATCTCATCACTCCAACTGTAACTATGTTTTTCCTTCTATGTTACACTGGTGTCAACTTATCCTGCTTCCTTCTTGATCTACTAGATGCCCCTAGTTGGCGTCCTCGGTGGAAATTTCACCATTGGAGTATGTCCCTTGTGGGAGCATTACTATGCATAGTGATCATGTTCCTAATCTCTTGGTCATTCACTGTGGTATCTTTGGCCCTTGCAAGCCTCATATATAAGTACGTGAGCATTAAAGGAAAGGCTGGGGACTGGGGTGATGGTTTCAAAAGTGCCTATTTCCAACTAGCACTTCGTAGCCTTCGGTCCCTTGGAGCAAGCCAAGTGCACCCAAAAAATTGGTATCCAATTCCACTAATATTTTGCCGACCCTGGGGCAAACTGCCAGAAAACGTTCCATGTCATCCCAAACTTGCAGATTTTGCGAACTGCATGAAGAAGAAAGGTCGAGGAATGTCCATATTTGTCTCTATACTAGATGGTGATTACCATGAACGTGCTGAAGATGCCAAAACTGCTTGTAAACAACTTAGCACCTACATTGATTACAAAAATTGTGAAGGTGTGGCTGAGATTGTTGTAGCCCCCAACATGTCTGAAGGCTTCCGTGGCATTATTCAGACAATGGGCCTGGGCAATCTCAAGCCAAACATTGTGGTGATGCGTTACCCAGAAATTTGGCGAAGGGAAAACTTGACAGAAATCCCTGCCACCTTCGTTGGGATAATCAATGATTGCATTGTTGCAAACAAAGCTGTGGTTATAGTTAAGGGTCTTGATGAATGGCCGAATGAGTACCAGAGGCAGTATGGTACGATTGATTTGTACTGGATTGTAAGAGATGGTGGTCTCATGCTGCTTCTCTCTCAGCTCCTTCTTACCAAGGCGAGCTTTGAGAATTGCAAGATTCAGGTCTTCTGTATCGCAGAAGACGATGGAGATGCAGAGGGACTGAAAGCTGATGTGAAAAAATTCCTTTATGATCTTCGGATGCAAGCGGAAGTTTTTGTCATAACAATGAAATGGGATGCACAGATGGATGGGGGTGGTGGGTCTCCACAAGACGAGTCGTCGGAAGCATTTACTAGTGCTCAGCAGAGAATTGATGATTACTTAACCCAGATGAAGGTAAGAGCACAGAAAGAAGGTACTCCTCTAAGGGCAGATGGTAAGCCTGTGGTTGTGAACGAGAAGCAGGTGGAGAAGTTTCTTTACACAACACTAAAACTCAATTCAATAATTCTGAGATATTCAAGAATGGCTGCTGTTGTATTGGTAAGTCTTCCTCCACCTCCACTGAGTCACCCAGCATACTTCTATATGGAGTACATGGATCTGTTGCTGGAGAATGTACCAAGGATTTTGATTGTAAGAGGTTATCGTAGAGACGTTGTAACTCTATTCACGTAG	2973	0.4356	MDRENGDGDIEGGGGDDGFRSGRKYRPVLANDRAVLEMSSIDPGSTSSSTSAFTDIPSNLRKVKTSLSGSSDAKEGNASHQQQPNGSQQQESKLELFGFDSLVNILGLKSMTGEQVAQPSSPRDGEDISITAGLPKPAAPKLGTLMGVFIPCIQSILGIIYYIRFSWIVGMAGIGQTLLLVSLCGTCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLKAVPAAGIFREAATQVNGTAVTQPIESPSSHDLQIYGIVVTILLCFIVFGGVKMINRVAPAFLIPVLFSVVCIFLGIFVARKDHPTEGITGLNSQTFRENWSSDYQKTNNAGIPQTDGSVTWDFNSLVGLFFPAVTGIMAGSNRSSSLKDTQRSIPVGTLAATLATTCLYFISLVLFGSVASREKLLTDRLLTATVAWPFPSLIKIGIILSTMGAALQSLTGAPRLLAAIANDDILPILNYFKAADGGEPHVATLFTAFLCIGCVIIGNLDLITPTVTMFFLLCYTGVNLSCFLLDLLDAPSWRPRWKFHHWSMSLVGALLCIVIMFLISWSFTVVSLALASLIYKYVSIKGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHERAEDAKTACKQLSTYIDYKNCEGVAEIVVAPNMSEGFRGIIQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKASFENCKIQVFCIAEDDGDAEGLKADVKKFLYDLRMQAEVFVITMKWDAQMDGGGGSPQDESSEAFTSAQQRIDDYLTQMKVRAQKEGTPLRADGKPVVVNEKQVEKFLYTTLKLNSIILRYSRMAAVVLVSLPPPPLSHPAYFYMEYMDLLLENVPRILIVRGYRRDVVTLFT	990

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g00464	990	NCBIfam	K-Cl cotransporter	80	990	IPR004842	GO:0006811\|GO:0015377\|GO:0016020
	Vian4g00464	990	FunFam	Cation-chloride cotransporter 1	141	605	-	-
	Vian4g00464	990	Pfam	Solute carrier family 12	657	778	IPR018491	GO:0006811\|GO:0016020\|GO:0022857
	Vian4g00464	990	Pfam	Solute carrier family 12	789	989	IPR018491	GO:0006811\|GO:0016020\|GO:0022857
	Vian4g00464	990	PANTHER	SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS	79	987	IPR004842	GO:0006811\|GO:0015377\|GO:0016020
	Vian4g00464	990	Gene3D	Amino acid/polyamine transporter I	140	605	-	-
	Vian4g00464	990	MobiDBLite	consensus disorder prediction	38	91	-	-
	Vian4g00464	990	MobiDBLite	consensus disorder prediction	1	25	-	-
	Vian4g00464	990	MobiDBLite	consensus disorder prediction	40	91	-	-
	Vian4g00464	990	Pfam	Amino acid permease	147	623	IPR004841	GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g00464	Vian-Chr4	5442448	5461609	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian4g00464	142	990	Inorganic Solute Cotransporters	AT1G30450	82.706	0.0	1444

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g00464	K14427		-	gmx:100795205	1754.95