Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00439 ATGGAGCAGTTGAAATTGGCTACAAATTCTGACGCCAAAGAGGATAACCCTTTGGGGAACAAGCCAAAAAATAGCAATGCACTTGAGTCTTCTGACAGTCTGAGAAATAGAAAGATATCAGCTCGATGGGATCCAGTTGGAGCATGTCGGCCAATAATTGAAGAAGCGCCTGTTTTTTATCCGACTATTGAAGAATTTGAAGACACTCTCAGTTACATAGCAAAGATACGACCCCTAGCTGAGCACCATGGCATATGTAGGATTGTTCCTCCGGCTTGTTGGGCTCCACCTTGTCCACTTAAGGAGAAAGATCTATGGGAAAATGCTGAATTTCCCACCCGTATTCAGCAAATTGATTTGCTTCAAAATAGGGAACCTATGAAGAAAAAATGTAGGGGAAGGAAGCGAAAACGTAGAAGGCTCTCCAGAACAGGCACATGTAGGAGGAAGCCTGCCAATGCAGCTTCTCATGCTAAGAATGCTTCTGATTCTGAAGAGAAATTTGGGTTCCAGTCAGGATCAGACTTCACGCTTAAAGACTTTCAGCAATATGCTGATTATTTTAAGGAATGCTATTTTGGGTTGAAAGATGCTGATAGAGACAGAACAGTTGGTGACAGTAACCATCAGAAGAGATGGGAGCCCTCTGAGGAAGAAATTGAAGGTGAATACTGGCGAATAGTTGAGCAACCAAGTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTTCCTAAGGCATCATCCATAACAACGAGTGACTCAGCTCAATATGCCCTGTCTGGTTGGAATCTGAACAATTTCGCCCGACTGCCAGGTTCTGTACTAAGCTACGAAGGAAGCGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTTTATTCACTAAACTATTTGCACTGGGGTGACCCTAAAGTATGGTATGGTGTACCTGGAAGCCATGCACCAGCCTTGGAAAATGCAATGAGGAAACACTTGCCTGATTTATTTGAGGAACAACCACATCTACTAAATGAACTGGTTACCCAATTTTCTCCTTCTATTCTTAAATCTGAGGGAGTACCTGTGTATCGCACAGTCCAGCATTCTGGGGAGTTTGTTATTACCTTTCCGAGGGCATATCATTCTGGCTTTAATTGTGGCTTCAACTGTGCAGAGGCAGTGAATGTGGCTCCTATTGATTGGTTAATGCATGGACAGAATGCTGTTGAGATTTACAGTTCACAATGCCGTAAGACATCGTTGTCCCATGACAAGCTGTTATTTGGATCAGCACTGGAAGGTGTACGGGCCAGTACAGAGATAGCTCTTGGAAAGGAATCTCCGAAAAATTTGAAATGGAGGAGTGTCTGTGGGAAAGATGGAGATCTTACCAAGGCAATTAAGGCAAGGATAAAGATGGAAGATGAAAGGCTAGATTGTCTTCCAACTCATCTTAAGTTGCTCAAGATGAACAGTGACTTTGATTTGTACACGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACTTATCTGCTGTAGAAAAGATTTGTTCTGCTACGATATACTAG 1626 0.4299 MEQLKLATNSDAKEDNPLGNKPKNSNALESSDSLRNRKISARWDPVGACRPIIEEAPVFYPTIEEFEDTLSYIAKIRPLAEHHGICRIVPPACWAPPCPLKEKDLWENAEFPTRIQQIDLLQNREPMKKKCRGRKRKRRRLSRTGTCRRKPANAASHAKNASDSEEKFGFQSGSDFTLKDFQQYADYFKECYFGLKDADRDRTVGDSNHQKRWEPSEEEIEGEYWRIVEQPSDEVEVYYGADLETGALGSGFPKASSITTSDSAQYALSGWNLNNFARLPGSVLSYEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHAPALENAMRKHLPDLFEEQPHLLNELVTQFSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPIDWLMHGQNAVEIYSSQCRKTSLSHDKLLFGSALEGVRASTEIALGKESPKNLKWRSVCGKDGDLTKAIKARIKMEDERLDCLPTHLKLLKMNSDFDLYTERECFSCFYDLHLSAVEKICSATIY 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00439 541 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Vian4g00439 541 Pfam jmjN domain 57 90 IPR003349 -
Vian4g00439 541 PANTHER LYSINE-SPECIFIC DEMETHYLASE 52 534 - -
Vian4g00439 541 MobiDBLite consensus disorder prediction 128 146 - -
Vian4g00439 541 SMART JmjN_1 55 96 IPR003349 -
Vian4g00439 541 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
Vian4g00439 541 MobiDBLite consensus disorder prediction 13 33 - -
Vian4g00439 541 ProSiteProfiles JmjC domain profile. 268 431 IPR003347 -
Vian4g00439 541 MobiDBLite consensus disorder prediction 1 33 - -
Vian4g00439 541 Gene3D Cupin 41 415 - -
Vian4g00439 541 SMART cupin_9 268 431 IPR003347 -
Vian4g00439 541 MobiDBLite consensus disorder prediction 128 167 - -
Vian4g00439 541 SUPERFAMILY Clavaminate synthase-like 229 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00439 Vian-Chr4 5051853 5056776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00439 10 541 JUMONJI Transcription Factor Family AT1G30810 64.695 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vian4g00439 JmjC 2.9e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00439 K11446 - gmx:100801775 985.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00439 4 5051853 5056776 Vian4g00439 4 5051853 5056776 ECH