Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00428 ATGGAGGCTCAATTAGAAGGGAAAAATCAGTATTTGTATGGACCTGTGGTGCCAGAGATGAAGAGTGTCGGGAAGAGAAGTTTGGAGTGGGATTTGAATGATTGGAAGTGGGATGGGGATCTTTTCACTGCTACGCAACTGAATTCACTGCCATCAGATTGTAGGAGTCGTCAGCTGTTTCCTGGTGATCCTGAAATTCGTGCAGCTGGTGATGCTTCTAACAGTTTGTCTTCTTCATATGATAATGTTAACCTTGCGGAAGGAAGGAGAGAATTGGAGAAGAGGAGGAGAGGTGTTGCTGATGAAGGTGGGGTGGAGATGAATGATGGAGCTGGTTCTCTTAATTTGAACCTTGGGGTCCAAGTATACCCTATCGTAGAAGGGGAGGAAAAAAGTGGAAAGAAGACAAAGATAACAGGGAGTACCTTGAACCGGGCTGTTTGTCAGGTGGAAGATTGTAGGGCTGATCTTAGTAATGCGAAGGATTATCACCGCCGCCACAAAGTTTGTGATATGCATTCTAAGGCAAGCAAGGCACTAGTTGGAAATGTTATGCAGAGATTCTGTCAACAGTGTAGCAGGTTTCACGTTCTTCAAGAATTTGATGAAGGGAAGAGAAGTTGTCGAAGGCGTCTGGCAGGCCACAATAAGAGGAGGAGGAAAACGCATCCTGATGCTAGTGTAGTTAATGACGGCTCTGTGAATGAAGAAAAGGGCAGTAGTTATCTGTTAATGAGTCTGCTAAGGATACTGTCCAATATGCATTCAAATGGTTCAGATAATATGACAAGCCAGGATGTTCTATCCCATCTGCTGAGGAACCTGGCAAGTCTGGCTGGTACAATTAATGGAAGAAATATAGTTTCTTTATTGGAGGGATCTCAAGATTTGGTAAAAGCAGGAACATCTGGAACTGCACAGAATGTTCCTAAGACAAATTCTAATGGTCCTGAAACGTCCAGACCTGTTGATACTTCTAACAAGATGGATAATGGTGTAATCAGTCGGGACCCTCCAGAGTCTATGATACAATGTGAGATGACTCCTGCTAATGGTATGCCTAAAGGATTCATAGGTTCAGGCAGTGATGGAGTAGGAAGTTCAAAATCTCCTTCATTACCACAGTTGTCAAATGTACTTCTGTCACGGGATAGTCTTCCACCCTATTCAGTCTCAGCAGAGACTACGGTTGGAAGAATTGGGTTAAGTAATATTGACCTGAATAGTGCATATGATGATGTACAGGATTATGTCGAGAACACAAGAAATTCTCGTCCTCCTTTGCCTTCAGGTAATGGGTCCCTTGATAATCCTTTATGGGTCCAATGTGACTCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACACAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATAGTTTTCAAACTATTTGGCAAGGCTCCAAATGATTTTCCCCATGCTCTCCGATCACAGATCCTTAACTGGTTATCCCACAGTCCCACCGAGATAGAGAGCTATATAAGGCCTGGCTGTATCATATTAACTGTATATCTCCGTCTAGAAAATTCCGCTTGGGAAGAGCTATGCCATAATCTAGGATCCAGCTTGAGAAAACTTGCTGTGCCGAATGATTCTTTTTGGAGATCAGGATGGATATATACAAGAGTGCAGCACTCGGTAGCTTTTCTGTATAATGGTCAGGTGGTCTTAGATGTACCATTGCGATTCAAAAGTCCACAGAATTGTCAGATTTTTTGTGTTAAACCACTTGCTGTTTCTTCAAGTTCTTGTGTTCAATTTATTGTGAAAGGATTCAACCTTTTGTTTTCTAACACCAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTGCAAGATAGTTGTTATGATTTGGTTGATGCTGATGCTGCCATTGGACATAATGAGCTTCAGCATCTGAGTTTCTCTTGTAGTATACCGAATTTGAGTGGAAGAGGGTTTATTGAGGTGGAAGATAATGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCAGAGATATGTAAGCTGGAGAATGTCATTGAGGCAGCCGAGACTGCTGATGACATCCAAATGAAAACTAAACTAATGGAAGAAAAGACCCAAGCATTGTATTTCGTACAAGAAATGGGTTGGCTCCTTCACAGAACCCGTGCGAAAGTTAGGCTGGGTCCTGTGGCACCTCTACAAGATTGCTTCCATTTTAATCGGTTCATGTGGCTTGTTGGCTTCTCTATGGACCATGACTGGTGTGCTGTGATGAAAAAGCTCTTGAACATTATCTTTGAAGGCACTGTGGATATAGGAGAGCATACATCAGTTGAGTTATCATTGTTAAAGATGGATCTTCTGCACAAAGCTGTAAAAAGAAATTGCAGGCCTATGGTGGAACTACTGCTAAAATTTGTGCCAGCTAATACTTCAGATGGTGGAGACAGTAAAGAGAAGCAAGTCAACAAGTCCCCTAATAGATTCATATTCAGACCTGATTCTGTTGGGCCTTCTGGATTGACTCCCCTTCATGTTGCAGCAAGTATGCATGGTTCGGATAATGTATTGGATGCATTAACTGATGATCCAGGACTGGTGGGAATTGAGGCATGGAAAAGTGCTCAGGACACTACAGGTTTGACCCCTTATGATCATGCATCCCTGCGGGGCTACTACTCCTACATTCAACTTGTCCAGACGAAAATAAGCAACACATGCAAAAGTGAACATGTGCTTAATATCCCTGGCACTCTTGTAGATAGTAACATAAGGCAGAAGCAATCAGATGGCCATAGGTCATCAAAAGTTTCAAGTTTGCAAACTGAAAAGATTGAAACAACAGCAATGGTGCGACATTGTGGGGTATGCCAGCACAAGTTGGCGTACGGTGGTATGAGAAGTGCACTGGTTTATAGGCCAGCAATGCTGTCAATGGTTGCCATTGCAGCTGTGTGTGTCTGCGTGGCTTTGCTCTTCAAAAGCTCTCCCAAAGTCTATTTCGTATTCCAGCCATTCAGTTGGGAGTCATTGGAATATGGATCCATGTAA 3096 0.4296 MEAQLEGKNQYLYGPVVPEMKSVGKRSLEWDLNDWKWDGDLFTATQLNSLPSDCRSRQLFPGDPEIRAAGDASNSLSSSYDNVNLAEGRRELEKRRRGVADEGGVEMNDGAGSLNLNLGVQVYPIVEGEEKSGKKTKITGSTLNRAVCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDASVVNDGSVNEEKGSSYLLMSLLRILSNMHSNGSDNMTSQDVLSHLLRNLASLAGTINGRNIVSLLEGSQDLVKAGTSGTAQNVPKTNSNGPETSRPVDTSNKMDNGVISRDPPESMIQCEMTPANGMPKGFIGSGSDGVGSSKSPSLPQLSNVLLSRDSLPPYSVSAETTVGRIGLSNIDLNSAYDDVQDYVENTRNSRPPLPSGNGSLDNPLWVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKAPNDFPHALRSQILNWLSHSPTEIESYIRPGCIILTVYLRLENSAWEELCHNLGSSLRKLAVPNDSFWRSGWIYTRVQHSVAFLYNGQVVLDVPLRFKSPQNCQIFCVKPLAVSSSSCVQFIVKGFNLLFSNTRLLCALEGKYLVQDSCYDLVDADAAIGHNELQHLSFSCSIPNLSGRGFIEVEDNGLSSCSFPFIVAEQEICSEICKLENVIEAAETADDIQMKTKLMEEKTQALYFVQEMGWLLHRTRAKVRLGPVAPLQDCFHFNRFMWLVGFSMDHDWCAVMKKLLNIIFEGTVDIGEHTSVELSLLKMDLLHKAVKRNCRPMVELLLKFVPANTSDGGDSKEKQVNKSPNRFIFRPDSVGPSGLTPLHVAASMHGSDNVLDALTDDPGLVGIEAWKSAQDTTGLTPYDHASLRGYYSYIQLVQTKISNTCKSEHVLNIPGTLVDSNIRQKQSDGHRSSKVSSLQTEKIETTAMVRHCGVCQHKLAYGGMRSALVYRPAMLSMVAIAAVCVCVALLFKSSPKVYFVFQPFSWESLEYGSM 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00428 1031 MobiDBLite consensus disorder prediction 301 331 - -
Vian4g00428 1031 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
Vian4g00428 1031 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 93 913 IPR044817 GO:0003677
Vian4g00428 1031 Gene3D - 140 209 IPR036893 GO:0003677|GO:0005634
Vian4g00428 1031 SUPERFAMILY Ankyrin repeat 800 916 IPR036770 -
Vian4g00428 1031 FunFam Squamosa promoter-binding-like protein 14 139 209 - -
Vian4g00428 1031 Gene3D - 784 948 IPR036770 -
Vian4g00428 1031 MobiDBLite consensus disorder prediction 439 474 - -
Vian4g00428 1031 SUPERFAMILY SBT domain 146 226 IPR036893 GO:0003677|GO:0005634
Vian4g00428 1031 MobiDBLite consensus disorder prediction 212 234 - -
Vian4g00428 1031 MobiDBLite consensus disorder prediction 349 372 - -
Vian4g00428 1031 Pfam SBP domain 148 221 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00428 Vian-Chr4 4936623 4946259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00428 1 1030 SBP-box Gene Family AT3G60030 45.290 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vian4g00428 SBP 5.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00428 - - gmx:100776125 1777.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00428 4 4936623 4946259 Vian4g00428 4 4936623 4946259 ECH
Vian1g00401 1 3653925 3665260 Vian4g00428 4 4936623 4946259 PCT