Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00416 ATGGAAGAAAAATCTTCGTTAAAAAATTTGCTGAAAGATGAAGAAAGGCCTTACGATTGTAATACAACAGGAAACGGAACCGATGAACCCTTCCTTCATAACACTATGGGATCCAGTGTTCTCTCCTTGAACCTGAATAACTCTGGACAGCCCTTGAACCAAATGGGCATGCTGAGAATCAAGCTTGAAGAAGCTAAGAAAGAGAATGAAATCCTAAAGACCATGCTAACCAAGGTTAATGAACACTGCACTGTTCTTCAGAATCGAATACTTTTTGAGATGCAGCAACATCAACTCTCTCCATCAGTTATCAATAAAAACAATAATCATGAGTCGCAGGGAAAAATACAAGATGTGGAGAAACCAATGCTACACACTCGGCAGTTTTTGAATATTGGTGACTGTTCTTCACTTTCAGAGGGTTATACAGAAAAGGTTGAAAAGAAAACATTAGACAGAAGCCTGGCATGTGAGAAAAAGAATATTGTTGAAGGTGAAATGAACACAAAAATTGCATTGCATGAAGCAAAATGCATAGAAGATCAAACATCTGAGGTTACTTGCAGAAGAGCTAAAGTATCCATAAGAGCACGATCAGATTTTTCTTTGATGGGAGATGGATGCCAATGGAGAAAGTACGGACAAAAGACTGCCAAAGGCAACCCTTGTCCCCGAGCCTACTACCGTTGCAGCATGGGAACTGCATGTCCAGTTCGTAAGCAGGTGCAGAGGTGTTTTAAGGATGAGACTGTTCTCATCACAACCTATGAAGGAAGCCATAACCACCCACTCCCACTAGCAGCAAGATCTTTGGCAAGCTCAACATCAGCAGCATTGAACATGTTCCTATCCGGCTCACTCACGAGTTCTGTTGGCACCACCACTCTACCAAACTCACCCCTCTTCTCTTCATCGCTGTCTTCTGTTTCCCCAACTGCAGTAGCCACTTTCTCCCATAGTGCAACATGTCCCACAGTAACACTGGACTTGACTCAGCCCAACAACAACAACAACTATCTCCAGTTCCAAAGGGCCACCACTTCACACCCTTTCTTCCCTCTCCCACTGCATGACCACCCTCATCAAGGGTTGCCCTTATTGTGTTCCAAAGTTCCAACCTTTTTAAGCCCAGACAAAAACCTTGCATTGGTGGATGTTGTCAGTCAGGCCATAACCAAAGACCCTTCTCTCAAGGCAGCTCTTTTTTCAGCCATTTCTTCACTCACCGGAGATTCTCAGAAGAACAGCAATAACCACACCCCACACAGTAAGAGTAGCAGTGGTTATGACCCTTGTTCTAAGATGCCTGCAATACCACCTCATCAGCCTTGCTCTACTGAGTTGATATAG 1350 0.437 MEEKSSLKNLLKDEERPYDCNTTGNGTDEPFLHNTMGSSVLSLNLNNSGQPLNQMGMLRIKLEEAKKENEILKTMLTKVNEHCTVLQNRILFEMQQHQLSPSVINKNNNHESQGKIQDVEKPMLHTRQFLNIGDCSSLSEGYTEKVEKKTLDRSLACEKKNIVEGEMNTKIALHEAKCIEDQTSEVTCRRAKVSIRARSDFSLMGDGCQWRKYGQKTAKGNPCPRAYYRCSMGTACPVRKQVQRCFKDETVLITTYEGSHNHPLPLAARSLASSTSAALNMFLSGSLTSSVGTTTLPNSPLFSSSLSSVSPTAVATFSHSATCPTVTLDLTQPNNNNNYLQFQRATTSHPFFPLPLHDHPHQGLPLLCSKVPTFLSPDKNLALVDVVSQAITKDPSLKAALFSAISSLTGDSQKNSNNHTPHSKSSSGYDPCSKMPAIPPHQPCSTELI 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00416 449 ProSiteProfiles WRKY domain profile. 199 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g00416 449 MobiDBLite consensus disorder prediction 410 449 - -
Vian4g00416 449 MobiDBLite consensus disorder prediction 1 31 - -
Vian4g00416 449 SUPERFAMILY WRKY DNA-binding domain 197 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian4g00416 449 Coils Coil 55 82 - -
Vian4g00416 449 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 53 419 IPR044810 GO:0003700
Vian4g00416 449 Pfam WRKY DNA -binding domain 206 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g00416 449 SMART WRKY_cls 204 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g00416 449 MobiDBLite consensus disorder prediction 1 19 - -
Vian4g00416 449 Gene3D WRKY domain 189 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian4g00416 449 MobiDBLite consensus disorder prediction 410 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00416 Vian-Chr4 4763919 4768437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00416 58 332 WRKY Transcription Factor Family AT4G04450 40.453 4.71e-61 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian4g00416 WRKY 1.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00416 - - gmx:100781603 568.54