Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00406 ATGGGTGGTTCTGTCACTGTCAAGTCCGAGGTTTCCCTTCTAGAATCTTCTCCCTCTCCTGTGGAGAAACCTGAAGGAGTTTGTTCCAACATAGATGAACACCACCTGGTCCAACCCAATATGAATGACTCCTCAACCAACAAGTCAGTGCCAACGTCTGGACTTAATGCAGTGATTCCTAGTACGAACCAGCTTACCATCTTCTACAATGGGAGTGTTTGTGTCTATGATGGAATCCCTGCAGAAAAGGTGCATGAAATTATGCTTATTGCTGCTGCTGCTGCCAAGTCTACTGAAGTGAAGAAGATTGGGACCCAATCTACCCTCATTTCACCTGTTCCCACAAGGCCTTCTTCTCCACATGCAATCACCAACAATATTGCTGCCTCACAGACAAATTCCATCTGCAGGCTGCAAGAATTTCCAATAGCTCGCAGGCATTCACTTCAAAGGTTTCTTGAGAAGCGGCGAGATAGGCTGGGTAGCAAAGCTCCTTATCCTTCCTCATCAACCACTAAAGTTGCTGATAACATAGAGAACAACTTCTGTGCTGACAATGCCCCGGAACTGGTATCCTTGAATCGAGCAGAGGAGGAATTTCATCCAACAGTCTCTGCCTCTTGA 624 0.4631 MGGSVTVKSEVSLLESSPSPVEKPEGVCSNIDEHHLVQPNMNDSSTNKSVPTSGLNAVIPSTNQLTIFYNGSVCVYDGIPAEKVHEIMLIAAAAAKSTEVKKIGTQSTLISPVPTRPSSPHAITNNIAASQTNSICRLQEFPIARRHSLQRFLEKRRDRLGSKAPYPSSSTTKVADNIENNFCADNAPELVSLNRAEEEFHPTVSAS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00406 207 ProSiteProfiles Tify domain profile. 58 93 IPR010399 -
Vian4g00406 207 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 45 175 IPR040390 -
Vian4g00406 207 SMART tify_2 58 93 IPR010399 -
Vian4g00406 207 MobiDBLite consensus disorder prediction 1 27 - -
Vian4g00406 207 Pfam Jas motif 142 166 IPR018467 -
Vian4g00406 207 MobiDBLite consensus disorder prediction 1 16 - -
Vian4g00406 207 Pfam tify domain 60 92 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00406 Vian-Chr4 4670526 4673936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00406 63 173 Tify Gene Family AT5G20900 51.261 1.56e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vian4g00406 tify 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00406 K13464 - gmx:100306045 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00445 1 4095261 4097310 Vian4g00406 4 4670526 4673936 PCT