Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00400 ATGGACGGATTCGACGGCACCAACGGCGTTGTGAAGGGTTTAGTGTCCACAGGGCTTGGCCAAGTGATGTCATTGCTGCAACAACTTCTTACACAGGTGAACCCCATGTCGAACCAATTCCCTTTCTCTCCCACAGTGGGGCAGTTTCCGTCGTGGGTTAAACCAGGGGACAGGAAGCTGCTCCAGGCAAATGGGGTGGTCGTGGATGCGGTGGTTTCCACCGATGGCACCGGGGACTTCACCAAAATCACCGATGCAGTCTTGGCTGCGCCTAATTACAGCATGAAACGCTACGTGATATTCGTGAAGAGAGGGGTTTACCATGAGAACGTTGAGATCAAGAAGAAGAAGTGGAACCTCATGATGATCGGAGAAGGCATGAATGTTACTGTTATCACCGGGAACAGGAGCTTCGTCGACGGTTGGACAACGTTCCGGTCAGCAACTTTTGCTGTGAGTGGCAGAGGATTCATAGCACGAGACATTACCTTCCAGAACACAGCAGGAGCAGTGAAGCACCAAGCTGTGGCACTGAGATCAGACTCTGACCTCTCTGTATTCTTCCGATGTGGGATTTCCGGTTACCAAGACAGCCTCTATACTCACACCATGCGCCAATTCTACAGAGAATGCAGAATCAGTGGAACCGTGGATTTCATATTTGGTGATGCCACTGCAATTTTCCAAAACTGCCTCATAGAGGTAAAAAAAGGGTTACCAAATCAAAAGAACACCATCACAGCTCAAGGAAGGAAAACCCCTGACGAACCAACTGGTTTCTCGATCCAGTTTTGCAACATTTCTGCTGATTCTGAGCTTGTGAACTCTGTGAACTCCACCCACACATACCTTGGCAGACCCTGGAAACAATATTCGAGAACAGTTTTCATGCAATCTTACATGAGTGATGTGTTGAGCCCAGAAGGATGGTTGGAGTGGGATGGGGACTTTGCCTTGGACACGTTGTACTATGCAGAGTACTTGAATTATGGAGCTGGTTCTGGTGTTCGTAATCGAGTGAAATGGCCAGGGTACCATGTCATGAATGATTCTAGCCAGGCTAGTAATTTCACAGTGTCACAATTTATTGAGGGGAATCTTTGGTTACCTTCAACTGGGGTAGCTTTCACAGCTGGATTGGAAGAATGA 1149 0.4813 MDGFDGTNGVVKGLVSTGLGQVMSLLQQLLTQVNPMSNQFPFSPTVGQFPSWVKPGDRKLLQANGVVVDAVVSTDGTGDFTKITDAVLAAPNYSMKRYVIFVKRGVYHENVEIKKKKWNLMMIGEGMNVTVITGNRSFVDGWTTFRSATFAVSGRGFIARDITFQNTAGAVKHQAVALRSDSDLSVFFRCGISGYQDSLYTHTMRQFYRECRISGTVDFIFGDATAIFQNCLIEVKKGLPNQKNTITAQGRKTPDEPTGFSIQFCNISADSELVNSVNSTHTYLGRPWKQYSRTVFMQSYMSDVLSPEGWLEWDGDFALDTLYYAEYLNYGAGSGVRNRVKWPGYHVMNDSSQASNFTVSQFIEGNLWLPSTGVAFTAGLEE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00400 382 SUPERFAMILY Pectin lyase-like 69 379 IPR011050 -
Vian4g00400 382 PANTHER PECTINESTERASE 20 370 - -
Vian4g00400 382 FunFam Pectinesterase 63 380 - -
Vian4g00400 382 Pfam Pectinesterase 69 366 IPR000070 GO:0030599|GO:0042545
Vian4g00400 382 ProSitePatterns Pectinesterase signature 2. 213 222 IPR033131 -
Vian4g00400 382 Gene3D - 66 382 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00400 Vian-Chr4 4589841 4592775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00400 1 380 Carbohydrate Esterase AT3G43270 68.112 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00400 K01051 - gmx:100777500 673.315