Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00399 ATGGCCTTCCAGGATTTCGAGCAAATCACTGAGCGCCGAAGAAACGAGAACAGACTCAAGCTCAGGAAGAAGATCTTAATCAGCGTGGTTTCCGCCGTTCTTCTTGCATGCGTGGTTGGCGCCGCCACATTCGTGGTTGTCCAGAGAACCGGTGGTTCCTCCACAAAAACCGCAACCCCAATACAAGAAGCCTCCGCGAGGCCACACGTGGACCAAAGCTCCAGGCTGGTAGAAATGATCTGCAGCTCCGCGGAGTACAAAGAGAAATGCAAGAAAACCCTCGGTGAGGCTCTGGAGAAGGACCCGAAGCTGACGGAGCCCAAGGACCTGCTCAAGGTCTCCTTTATCCTTGCCGAGAACGAGATGAACAAAGCCTTCAACGAAACCACGAAAATGGAGTTCGCGTCGGCACAGGAGAAAGGCGCGTACAGTGATTGCAAGGAGATGTTCGATGACGCCAAGGATGAGCTGAGACGTTCGATCGACGAGGTCGGAGAAAACGATGCCAAAGTACTCTCCACGAAAGCTTCAGAAATCAACAACTGGCTCAGCGCTGTTATGAACTACGAGCAAACCTGCATCGATGGGATTCCCGAAGGAAAGATGAGGGAAGACTTCACGAAGCTATTCGCCGAGTCAAGGGAGCTTGTGAGCAATGCCCTTGCCGTTATGTCGCAGTTTGCTTCGTTCTTTTCGATCTTCCAAGGAGCTGGGAACATTCACCTTCCATGGGAAACCAACGATAAAGATGCACCTGCCCCTGCTTCTGCTTCCGGTTCTTCTGCTTCTTCTGCTTCTGCTCCTGGTGTTGCCCCTGCAGGTTCTGCTCCTGCTCCTGGTTTCGCTCCTCGTGCTGCTCCGGTCCCAATGCCTTCCTTGGATGATCCACTTCCAACATTGCCTATCCCTGCTTGGGCTGGCCCTTCTGAGTTCAAAGGATCAGATGAGAAACCCACACCCAATGTCACCGTCGCACAAGATGGAAGCGGAGACTTCAAAACCATCTCTGAAGCCTTGGCTGCCATCCAGACACCATACGAGGGAAGGTACGTGGTTTATGTTAAAGCTGGAATTTACGATGAGACCGTGACAGTGACAAGGAAAATGGTAAACCTAACCATGTATGGTGACGGAGGTGACAAGAGTATCATTACTGGGAACAAAAATTTCGTTGATGGAGTCAGAACTTTCCAAACTGCATCATTCGTGGTACTGGGAGATGGATTCTTGGGAAAAGAGATGCAATTCAGAAACACTGCAGGAGCAGAGAAGCATCAAGCAGTGGCTGCAAGAGTGCAAGCCGATCAAGCAATGTTTTTTAACTGTGTCTTTGATGGTTACCAAGACACTCTCTACGCCCAAACCCACAGACAGTTCTACCGCGACTGCACCATCACCGGCACCATCGACTTCATCTTCGGGGACGCATCAGCAGTGTTTCAAAACTGCACGATAATGGTGAAAAAGCCCCTTGAAAACCAGCAGAACATAGTGACTGCACAAGGGAGACTAGACAGGCAAGAAAACACTGGGTTCGTTCTGCAGAAGTGTGTGATCAAAGCTGCTGATGACTTGGTCCCGTTGAAGGGGACGGTGAGGAACTACCTCGGAAGGCCCTGGAAGGAGTACTCAAGAACCATCATCATGGAGACTCAAATAGAAGACTTGATTCACCCAGATGGGTGGCTTCCATGGGAAGGGGACTTTGCACTCAAAACGCTGTACTATGGTGAGTTCAACAACAATGGAGTAGGTGCCAGCACCAGCGCTAGGGTGAACTGGCCTAACCGCAAAGTCATTGATAGGGATGAGGCTACCAGGTACACGGTTGAGGCTTTCTTGCAAGGGGCATGGATCAATGGCACAGGAGTCCCTGCTCAACTGGGCTTGTACTCTTAA 1899 0.5082 MAFQDFEQITERRRNENRLKLRKKILISVVSAVLLACVVGAATFVVVQRTGGSSTKTATPIQEASARPHVDQSSRLVEMICSSAEYKEKCKKTLGEALEKDPKLTEPKDLLKVSFILAENEMNKAFNETTKMEFASAQEKGAYSDCKEMFDDAKDELRRSIDEVGENDAKVLSTKASEINNWLSAVMNYEQTCIDGIPEGKMREDFTKLFAESRELVSNALAVMSQFASFFSIFQGAGNIHLPWETNDKDAPAPASASGSSASSASAPGVAPAGSAPAPGFAPRAAPVPMPSLDDPLPTLPIPAWAGPSEFKGSDEKPTPNVTVAQDGSGDFKTISEALAAIQTPYEGRYVVYVKAGIYDETVTVTRKMVNLTMYGDGGDKSIITGNKNFVDGVRTFQTASFVVLGDGFLGKEMQFRNTAGAEKHQAVAARVQADQAMFFNCVFDGYQDTLYAQTHRQFYRDCTITGTIDFIFGDASAVFQNCTIMVKKPLENQQNIVTAQGRLDRQENTGFVLQKCVIKAADDLVPLKGTVRNYLGRPWKEYSRTIIMETQIEDLIHPDGWLPWEGDFALKTLYYGEFNNNGVGASTSARVNWPNRKVIDRDEATRYTVEAFLQGAWINGTGVPAQLGLYS 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00399 632 MobiDBLite consensus disorder prediction 282 303 - -
Vian4g00399 632 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 227 IPR035513 -
Vian4g00399 632 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 227 IPR035513 -
Vian4g00399 632 SMART PMEI_2 72 223 IPR006501 GO:0004857
Vian4g00399 632 Gene3D - 316 630 IPR012334 -
Vian4g00399 632 MobiDBLite consensus disorder prediction 245 328 - -
Vian4g00399 632 Pfam Plant invertase/pectin methylesterase inhibitor 76 222 IPR006501 GO:0004857
Vian4g00399 632 Pfam Pectinesterase 321 616 IPR000070 GO:0030599|GO:0042545
Vian4g00399 632 CDD PMEI-like_3 80 229 - -
Vian4g00399 632 ProSitePatterns Pectinesterase signature 2. 465 474 IPR033131 -
Vian4g00399 632 FunFam Pectinesterase 73 228 - -
Vian4g00399 632 FunFam Pectinesterase 315 630 - -
Vian4g00399 632 MobiDBLite consensus disorder prediction 253 268 - -
Vian4g00399 632 SUPERFAMILY Pectin lyase-like 319 624 IPR011050 -
Vian4g00399 632 NCBIfam pectinesterase inhibitor domain 61 226 IPR006501 GO:0004857
Vian4g00399 632 PANTHER PECTINESTERASE 33 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00399 Vian-Chr4 4550275 4552338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00399 1 631 Carbohydrate Esterase AT2G26450 41.045 8.87e-175 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00399 - - gmx:100807628 917.146