Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00398 ATGGATAAAATTAGCCATTGTTGTCCTTTTCTTCATCTGAGAGTGAGAACACAGCAATTTGTGGTAACCCTTTCAGTATTAGGCAGTGCACTGTCGTGGATCACCACTTCTGATGCTCAGAATCAGTGCAGTCATACTAGATATCCCGATCTATGTGCTCAAACCTTGATGCAATTTGGTTCATCTAATCAAAGTGTTGATCATAACATTTTGGCTCTTGTCAACAAAACCATTTTAGAAACTAACTTGCCAAGTTCATATTTTGCTGAATACAAGACTGATGATGAAGATGGAGCCCATTCTGTCGTCGCAGATTACTGTGAAGAGCTTATTGGCATGTCATTGAAAAGGTTAGATCAATCCCTGAGAGCACTGAAATCCCCTACAAGAAAAAACAATGACATTCAAACATGGCTAAGTGCTTCCATAACTTTCCAACAAACTTGTAAAGACTATGCAGATGCACACACCACAATCTCTCCAGGAGGCCTTATGCAAAGAATGTCAGACAAAATGCACTATCTTTCTCAACTGGGAAGCAACTCATTAGCACTTGTTAACCATGTGAGCAAAAAAGGTAGCCAGAAAGATGAAACTAACAAAGAGGAACATGAATTTCCCAAGTGGGTATCAGCCAAAGGACGTAAGCTGCTTCAAGGAGGCACCATAAAAGCAAATGCCATAGTTGCACAAGATGGTTCAGGAGATTACAAGACAGTTTCTGAAGCCATTAGGGCAGCTTCAGGGAACAGGTTTGTGATTTATGTCAAGGAAGGGGTTTACAAAGAGAAGATTCGCACCAGCAAGGATGGAATCACCTTAATTGGAGATGGAAAATCCTCTACTCTTATTGTTGGAGATGACAGTGTTGCCGAGGGTTCTTCCTTAACCGACTCAGCCACGTTTACAATCACCGGCGATGGCTTTATGGCACGCGACATCGGATTCCAGAACAACGCTGGCCCAGGAGGCGAACAAGCGGTGGCTCTGAACATAGCCTCCGACCATGCCGTCCTCTACCGGTGCAGCATATCAGGGTACCAAGACACCCTCTACGCCCTCGCCCTCCGCCAGTTCTACGCAGAATGCGACATTTACGGCACGATCGACTTCATCTTCGGCAACGCCGCCGCCGTCTTCCAGCGCTGCAACCTCCTCCTCCGCCGCCCTCGCGGCTCCAGCTACAACGCCATTCTGGCCAACGGCCGAACTGACCCCGGCCAGAACACCGGGTTCTCCGTTCACAAGTGCAGCATATTGCCGACCTCGGACTTTACGCAGTCGCGCAGTTCGTTTCTGGGGAGGCCCTGGAAGGAGTATTCGAGATCGGTGGTGATGCAGAGTACAATCGACGATGTGATTGCGGCGAAAGGGTGGGTGGCGTGGCCTGGGTATGGAAGCTCCGTGTTGAAGAGTTTGTATTTCGCGGAGTATGGCAATGAAGGAGGTGGTGCTGGAACCGCAGGGAGGGTGCAGTGGCAGGGTTTTCATGTTCTTAAGGCTGAGGATGCTGCCAAATTCAGTGTTGCTAATTTTATTGCTGGAAACTCGTGGATTCCCTCCAGTGGAGTTAATTTCATTTCAGGGCTTAATTAA 1596 0.4774 MDKISHCCPFLHLRVRTQQFVVTLSVLGSALSWITTSDAQNQCSHTRYPDLCAQTLMQFGSSNQSVDHNILALVNKTILETNLPSSYFAEYKTDDEDGAHSVVADYCEELIGMSLKRLDQSLRALKSPTRKNNDIQTWLSASITFQQTCKDYADAHTTISPGGLMQRMSDKMHYLSQLGSNSLALVNHVSKKGSQKDETNKEEHEFPKWVSAKGRKLLQGGTIKANAIVAQDGSGDYKTVSEAIRAASGNRFVIYVKEGVYKEKIRTSKDGITLIGDGKSSTLIVGDDSVAEGSSLTDSATFTITGDGFMARDIGFQNNAGPGGEQAVALNIASDHAVLYRCSISGYQDTLYALALRQFYAECDIYGTIDFIFGNAAAVFQRCNLLLRRPRGSSYNAILANGRTDPGQNTGFSVHKCSILPTSDFTQSRSSFLGRPWKEYSRSVVMQSTIDDVIAAKGWVAWPGYGSSVLKSLYFAEYGNEGGGAGTAGRVQWQGFHVLKAEDAAKFSVANFIAGNSWIPSSGVNFISGLN 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00398 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 191 IPR035513 -
Vian4g00398 531 PANTHER PECTINESTERASE 31 520 - -
Vian4g00398 531 NCBIfam pectinesterase inhibitor domain 22 188 IPR006501 GO:0004857
Vian4g00398 531 Gene3D - 220 530 IPR012334 -
Vian4g00398 531 Pfam Pectinesterase 226 516 IPR000070 GO:0030599|GO:0042545
Vian4g00398 531 FunFam Pectinesterase 4 223 530 - -
Vian4g00398 531 FunFam Pectinesterase 36 190 - -
Vian4g00398 531 CDD PMEI-like_3 43 191 - -
Vian4g00398 531 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Vian4g00398 531 Pfam Plant invertase/pectin methylesterase inhibitor 40 185 IPR006501 GO:0004857
Vian4g00398 531 SUPERFAMILY Pectin lyase-like 223 529 IPR011050 -
Vian4g00398 531 SMART PMEI_2 34 185 IPR006501 GO:0004857
Vian4g00398 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 190 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00398 Vian-Chr4 4530696 4533911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00398 10 530 Carbohydrate Esterase AT2G45220 41.353 3.97e-125 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00398 K01051 - gmx:100795439 769.229