Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00394 ATGCCATCACCCTTCACCAACTTTACCACTACAACCACAACCAACACCTCCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCGTTACTCTCCACAACACAAACAAAACCAAACACGTAACAGAAACACATCACATGCCACCAATATTGTCCCTCCTCACAAACTGCAACACTCAATGGCTTCTTCCAATTCCGTTTCTTCTCTTAACGTCGTCGGATACACACACACTACTTCTCCACCAAACAACCACCTATCATCGCCATCACACATCACTCTCCTCGCGCTAACGCTCGTCATCCTCGCCGTTACCGTTTCGCTGGCTGTTTATTTCCTTCTCCGTTACCGTAACCGTTTCCTCCGTCGTATCTCTCCCTCATCCGCTTCATTATTCTCGTCCGGGAATCCGATATCGTCGGACACCGCTTCGCCTTCCATCGTCGGCTCTCTACCGGCGTTCTCCTTCTCCTCCGTGACGAGACGCTCCGCCGCATCCGGTGGCGGCGAGGACTGCGCTGTGTGCTTATCGAAGTTCGAGCAACACGACCTTCTCCGTTTGTTACCTCTATGCTGCCACGCTTTCCACGCTGAATGCATCGACACGTGGCTCCAATCGAACCTCACGTGTCCGCTCTGCCGATCCGCCGTCAGCGCGTCGGAGTCTGACCTCGCCAAGGTCTTCCGCTCGTCGTCCGTCGCCGGCGGCGAGAGCTTTCGGCTTGAGATAGGGAACATCAGCAGCAGCGACCGCCGTGGAGCGGCGGCCGACGAGGAAACGCGCGGGAGGTCCTATTCCGTTGGTGCGTTCGAGTATTTAATTGACGAGGAGGCTGCGGCTGAGGTTGAGATTGAGGTTGCGTTCGGTTATGCTATCCAGAGAAGCGTTTCTGGCGAGAAACATGACGGCGCTACGGTGGAGGCTGCGGCAGATTCTCTGCCGAGCTTGGCTGCTGAGGTAGGGCGTGGAGGAAGTAACAATAGTAGTGGCTGGTTGAAGGATTACGTTGATCGTCTTTCGAATACGATGTCGTTTCGAAGTTCTGGAAGGTTCTTCACTGGGAGTAGTCGCCGAAGCGACGTCGTTGAGGGTGGAGATTACGATGCTGAAGCCAACCGTTTGGGGGATGAAATTGGTGAAATGTTTCGATGGCTCTCGGCGGTTTGA 1185 0.5435 MPSPFTNFTTTTTTNTSSFSLSLSLSLSLSLSLSLRYSPQHKQNQTRNRNTSHATNIVPPHKLQHSMASSNSVSSLNVVGYTHTTSPPNNHLSSPSHITLLALTLVILAVTVSLAVYFLLRYRNRFLRRISPSSASLFSSGNPISSDTASPSIVGSLPAFSFSSVTRRSAASGGGEDCAVCLSKFEQHDLLRLLPLCCHAFHAECIDTWLQSNLTCPLCRSAVSASESDLAKVFRSSSVAGGESFRLEIGNISSSDRRGAAADEETRGRSYSVGAFEYLIDEEAAAEVEIEVAFGYAIQRSVSGEKHDGATVEAAADSLPSLAAEVGRGGSNNSSGWLKDYVDRLSNTMSFRSSGRFFTGSSRRSDVVEGGDYDAEANRLGDEIGEMFRWLSAV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00394 394 ProSiteProfiles Zinc finger RING-type profile. 178 220 IPR001841 -
Vian4g00394 394 CDD RING-H2_EL5-like 177 220 - -
Vian4g00394 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 96 291 - -
Vian4g00394 394 SMART ring_2 178 219 IPR001841 -
Vian4g00394 394 Pfam Ring finger domain 177 220 IPR001841 -
Vian4g00394 394 SUPERFAMILY RING/U-box 174 225 - -
Vian4g00394 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 226 IPR013083 -
Vian4g00394 394 FunFam E3 ubiquitin-protein ligase ATL6 143 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00394 Vian-Chr4 4492162 4493416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00394 76 220 C3H Transcription Factor Family AT2G34990 35.762 4.02e-23 97.1