Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian4g00392 | ATGTTCAATCCTCAAACCTCGCCACCGCCGCTTCCGGTCATGACTCCGCCGGCAACCCCTCTCAACCATGAAACGACGTCGCACAAGAAAAATCGCAGAACCACCGGAGTTCCCGTTCCCCTTCCTCACTCAGTGGAAGTGATTGACGTTGACGATTCCCCTGCCTCCGCCTTTTTCACGCCCATCTCCTTCCTAGGCACGATCAGGTCAAACGCTGTCTCCGTTGAGCAACGTGACGGTTTTTCCAAATCTGTCCACATCATCGACCTTTCCGACACCGAGGACGACGATGATTTACGTATCCTCAATTTCACTCCCGCAAACACTTCCTTTGGCAAAAGGAAAAAGCTCAGGGGAGAATCCTCCAACGCAGCCCCCTTCGACTGCGAAATCTGTGCTGAAACTAAAACATCCAAGGAAGCCTTCTCCATCAACGGCTGCTGCCACGTGTACTGCAACCAGTGCATCGCGCTCTATGTCGAATCGAAGCTCCAGGACAACGTGGTCAACATAGGCTGCCCTGTGCCGCGGTGCAGGGGGTTATTGGAAGCCGAAGATTGCCGTTCGATTCTCGCGCCTGAGGTTTTGGATCGGTGGGGTAAAGCGCTGTGTGAGGCGGTGATTTCTGTGGAAGAGAAGTTCTATTGTCCTTTTCCAGATTGCTCTGTGCTGTTGATTCGCGAGGAGAAGGATGAGGGTATCAAAGAATCGAATTGTCCTAACTGTGGGAGGCTGTTTTGTGCGCTGTGTAGGGTACCCTGGCACGAGGACATGCCCTGTGAGGAGTTTCAGAAACTGAACGCCGAAGAGAGGGGAAGAGAGGATGTGATGCTGAGGAACCTTGCCAAGCAAATGATGTGGAAGAGGTGTCCCACTTGTGGGTTTTACGTCGCCAAAACCTCTGGCTGTATGTACATGAAATGCAGGTGTGGGAGTGCCTTCTGTTACAACTGTGGGATTCCTAACTCATCTAACCTCCATTATTGCTCCTCCTGTAGAAGATAA | 1005 | 0.5194 | MFNPQTSPPPLPVMTPPATPLNHETTSHKKNRRTTGVPVPLPHSVEVIDVDDSPASAFFTPISFLGTIRSNAVSVEQRDGFSKSVHIIDLSDTEDDDDLRILNFTPANTSFGKRKKLRGESSNAAPFDCEICAETKTSKEAFSINGCCHVYCNQCIALYVESKLQDNVVNIGCPVPRCRGLLEAEDCRSILAPEVLDRWGKALCEAVISVEEKFYCPFPDCSVLLIREEKDEGIKESNCPNCGRLFCALCRVPWHEDMPCEEFQKLNAEERGREDVMLRNLAKQMMWKRCPTCGFYVAKTSGCMYMKCRCGSAFCYNCGIPNSSNLHYCSSCRR | 334 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian4g00392 | 334 | ProSitePatterns | Zinc finger RING-type signature. | 147 | 156 | IPR017907 | - | |
| Vian4g00392 | 334 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Vian4g00392 | 334 | Pfam | IBR domain, a half RING-finger domain | 205 | 260 | IPR002867 | GO:0008270 | |
| Vian4g00392 | 334 | SUPERFAMILY | RING/U-box | 126 | 206 | - | - | |
| Vian4g00392 | 334 | ProSiteProfiles | Zinc finger RING-type profile. | 129 | 177 | IPR001841 | - | |
| Vian4g00392 | 334 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 67 | 332 | IPR031127 | GO:0004842|GO:0016567 | |
| Vian4g00392 | 334 | SMART | ibrneu5 | 270 | 332 | IPR002867 | GO:0008270 | |
| Vian4g00392 | 334 | SMART | ibrneu5 | 197 | 260 | IPR002867 | GO:0008270 | |
| Vian4g00392 | 334 | CDD | Rcat_RBR_unk | 286 | 322 | - | - | |
| Vian4g00392 | 334 | SUPERFAMILY | RING/U-box | 203 | 265 | - | - | |
| Vian4g00392 | 334 | FunFam | RBR-type E3 ubiquitin transferase | 124 | 210 | - | - | |
| Vian4g00392 | 334 | SUPERFAMILY | RING/U-box | 271 | 333 | - | - | |
| Vian4g00392 | 334 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 210 | IPR013083 | - | |
| Vian4g00392 | 334 | ProSiteProfiles | TRIAD supradomain profile. | 125 | 334 | IPR044066 | - | |
| Vian4g00392 | 334 | FunFam | RBR-type E3 ubiquitin transferase | 262 | 334 | - | - | |
| Vian4g00392 | 334 | Gene3D | - | 214 | 261 | - | - | |
| Vian4g00392 | 334 | CDD | BRcat_RBR_unk | 212 | 263 | - | - | |
| Vian4g00392 | 334 | Gene3D | - | 262 | 334 | - | - | |
| Vian4g00392 | 334 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian4g00392 | Vian-Chr4 | 4467253 | 4469049 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian4g00392 | 129 | 321 | C3H Transcription Factor Family | AT2G19610 | 32.195 | 2.71e-25 | 103 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vian4g00392 | 4 | 4467253 | 4469049 | Vian4g00392 | 4 | 4467253 | 4469049 | ECH |