Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00385 ATGGATAGCGGTGTAGGCTACAAATTGACAGGGATTAGGCAGATTGTGAGGTTAAAGGAAATGCTGCAGAAGTGGCAGAACGTGACTTTAGGGCAAAAAGCTTCGATTCCCACCATTACTGATAAAGTGCCTAACAATGATGGAAGCGGATTGCCATTGATAAACAAAAGGGTAGTGAATGTTATGAACACTGAATCTGACACAGAAGACAGCTGCCAAAGTCCTGAACCGCTTCCACCACCTGATGTTCCAAAGGGATACTTGGCAGTGTATGTTGGACCTGAGCTAAGGAGGTTCATCATTCCCACCACTTATCTCAGCCACTCTCTCTTCAAAGTTTTGCTGGAAAAGGCTGCAGATGAATTTGGCTTTGATCACAGTGGAGGCCTCACCATCCCTTGTGAGACTGAGACCTTCAAGTACCTACTCAAGTGCATCGAGAATGAAAACAAAGACCAACTCAATCATAAAACTGCACAAGCAGCCGAAAGCTCGGGAACTGTGGAAGAGTAA 513 0.4522 MDSGVGYKLTGIRQIVRLKEMLQKWQNVTLGQKASIPTITDKVPNNDGSGLPLINKRVVNVMNTESDTEDSCQSPEPLPPPDVPKGYLAVYVGPELRRFIIPTTYLSHSLFKVLLEKAADEFGFDHSGGLTIPCETETFKYLLKCIENENKDQLNHKTAQAAESSGTVEE 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00385 170 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 67 142 IPR003676 GO:0009733
Vian4g00385 170 Pfam Auxin responsive protein 78 146 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00385 Vian-Chr4 4379498 4380010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00385 1 152 Calmodulin-binding Proteins AT3G43120 66.447 7.03e-69 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00385 K14488 - gmx:100527570 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00385 4 4379498 4380010 Vian4g00385 4 4379498 4380010 ECH
Vian1g00470 1 4405234 4406075 Vian4g00385 4 4379498 4380010 PCT