Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00383 ATGCTTCTACTCTCCTTTTTCTTAACATCTCCCACGCTTTTCACCACCGCAGCACAGGGCAAGCCGCAGGATCTACTCCGATCCTCCTGCGTCCACTCACGCTACCCGCGTCTCTGCCTGCGCACCCTCGCGCACTACCCGGGCCCTGCCAACACGCCCCTGGACATGGCTCGAGCCGCGCTCAGGGTCAGCCTGGCCCACACTCGCCGGACCTCCAAGTTCCTGCACACGCTGTCTAAAGGCGGTGCCGCTGCGATGAGCAAGCGGCAGCGCTCCGCTCTCCGCGACTGCACAGAGCAGATCTCGGACTCCGTGGACCAGCTCCGGCGGAGCCTCGACGAGCTACAACACCTACGCGCAGAGACGTTCCGCTGGCAAATGAGCAACGCTCAGACGTGGGTGAGCGCCGCCCTCACCGACGGCGACACGTGCCTCGACGGCTTCGCCGGCAATGCCAGGCCCGACGTCAAACGCAGAGTCACCGACGTTGCCAGGGTCACCAGCAATGCTCTGTATATGATAAATCGGCTGGGTCAAAGTAGGAGCGGAAAGTCGAAGCCCAAGCCCAAGCACAGGCCTGATTCTCTCAAAAAATAG 597 0.6214 MLLLSFFLTSPTLFTTAAQGKPQDLLRSSCVHSRYPRLCLRTLAHYPGPANTPLDMARAALRVSLAHTRRTSKFLHTLSKGGAAAMSKRQRSALRDCTEQISDSVDQLRRSLDELQHLRAETFRWQMSNAQTWVSAALTDGDTCLDGFAGNARPDVKRRVTDVARVTSNALYMINRLGQSRSGKSKPKPKHRPDSLKK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00383 198 SMART PMEI_2 21 173 IPR006501 GO:0004857
Vian4g00383 198 CDD PMEI-like_3 28 177 - -
Vian4g00383 198 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 23 177 IPR035513 -
Vian4g00383 198 Coils Coil 98 118 - -
Vian4g00383 198 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 178 IPR035513 -
Vian4g00383 198 NCBIfam pectinesterase inhibitor domain 4 177 IPR006501 GO:0004857
Vian4g00383 198 MobiDBLite consensus disorder prediction 177 198 - -
Vian4g00383 198 PANTHER PECTINESTERASE INHIBITOR-LIKE 3 172 - -
Vian4g00383 198 Pfam Plant invertase/pectin methylesterase inhibitor 25 172 IPR006501 GO:0004857
Vian4g00383 198 FunFam Pectinesterase inhibitor 3 21 178 - -
Vian4g00383 198 MobiDBLite consensus disorder prediction 183 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00383 Vian-Chr4 4348977 4349573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00383 21 171 Carbohydrate Esterase AT5G53370 32.911 2.63e-17 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00383 - - gmx:100816686 327.405