Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00381 ATGGAAGCATATGTAGCGGGGAGTGTAGGGAACCATACGAGGTTACTTCCTGTGTCAAGAACGAGGGGGAGGTTTGGGGGAGGGGGAGGTTTGGGGGAGGGGGCCAGAGTTAGAGAAGTTGAAGCGGCGAGTTTGAGAGAGTGGAAGAGACCGGAGGATTGGGAACGAACCGGGAATGAGACATATTCATTTTTATATACCAAAAAATATTTACCATTCAATGAGACTACTACGAAATTGAAAAACTACTGGACCAAATTAGCTTCACTAACGCAAGACCCCAATTTGTTGTCTCTTCAAGCAGGAATGGGGGCTCTGGTGGCAAGAGTGGTGACTGGCAAAGAAATGAACAGCTCTTCTTCTTCTTCTGCTGCTAGATACAAAAGTGGATATCCTAGGAGACAAGACACACACACATATTTCCCAAGTTGGGTAACAAAATTCCAAGACCATCCAACATTCAAGATTAACATGGGCAATGATCTGCTTACCTTGCCCTATTGTTGCTGGATTGGTGGACAAAGACGCAACACTACAACTGGTTATCAATGCGATAATCCTCACTCTTCTCTGTGTATACTTGATATAGGTATGGATTATTACCTTATCATCCTCATAGTAGTCAGTGCATTGATACTCTCCACAACATTAGCAGTGGTAGTTTGGCTTCTTGTATATAAGCGGGGAAAGAAAAGAAGGCGGTCTAGAAAAATATCTGTTCCAGGAGCTTCTCTTCCATCATGGAAAGTCTTCACCAAAGAGGAGTTAAGGTCAATTACGAAGAATTTCAGTGAAGGTAATCGTCTTGTTGGTGATACCAAGACTGGTGGTACATACAGTGGGGTTTTATCAGATGGTTCAAGGGTTGCAGTTAAGAGATTAAAGAGGACAAGTTTTCAGAGGAAAAAGGAGTTTTATTCTGAAATTAGCAGGGTTGCTAGGCTTCGATATCCCAATCTGGTTGCTGTGATGGGATGCTGCTATGATCATGGTGATCGCTACATTGTTTATGAGTTTGTAGCTAATGGTCCCTTAGATAAATGGCTGCATCACATACCTAGGGGAGGTCGCAGCTTAGATTGGGCTATGAGGATGAAAATTGCTACAACGCTTGCTCAAGGAATTGCGTTTCTGCATGACAAGGTTAAGCCACAAGTGGTGCATCGAGATATACGTGCAAGCAATGTACTCCTGGATGAGGAGTTTGGAGCACGCCTGATGGGTGTTGGTCTGTCCAAGATTGTGCCGTACGAAGTAATGCATGAGAGAACTGTCATGGCAGGTGGAACTTACGGATATCTTGCTCCAGAGTTTGTGTATAGAAACGAGTTTACAACAAAGAGTGACGTATATAGTTTTGGCGTCCTACTACTTGAAATAGTAAGTGGACGTAGACCTACACAGGCAGTTGATTCTGTTGGTTGGCAGAGTATCTTTGAGTGGGCAACACCTCTTGTGCAAGTTCATCGCTACCACGAACTCTTGGATCCTCATATAACTTCATCCTCTTCTAGCATTATCCCTGAGGCTAGTACCATCCAAAAGGTGGTTGACCTTGTTTATTCCTGCACGCAGCATGTTCCTTCTATGCGCCCTAGAATGTCTCATGTTGTTCACCAGCTGCAACAAATTGCCCAACCACCTGCAAAGTAA 1653 0.4398 MEAYVAGSVGNHTRLLPVSRTRGRFGGGGGLGEGARVREVEAASLREWKRPEDWERTGNETYSFLYTKKYLPFNETTTKLKNYWTKLASLTQDPNLLSLQAGMGALVARVVTGKEMNSSSSSSAARYKSGYPRRQDTHTYFPSWVTKFQDHPTFKINMGNDLLTLPYCCWIGGQRRNTTTGYQCDNPHSSLCILDIGMDYYLIILIVVSALILSTTLAVVVWLLVYKRGKKRRRSRKISVPGASLPSWKVFTKEELRSITKNFSEGNRLVGDTKTGGTYSGVLSDGSRVAVKRLKRTSFQRKKEFYSEISRVARLRYPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGARLMGVGLSKIVPYEVMHERTVMAGGTYGYLAPEFVYRNEFTTKSDVYSFGVLLLEIVSGRRPTQAVDSVGWQSIFEWATPLVQVHRYHELLDPHITSSSSSIIPEASTIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQIAQPPAK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00381 550 FunFam C-type lectin receptor-like tyrosine-protein kinase 241 339 - -
Vian4g00381 550 Pfam Protein tyrosine and serine/threonine kinase 274 541 IPR001245 GO:0004672|GO:0006468
Vian4g00381 550 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 201 545 - -
Vian4g00381 550 ProSitePatterns Tyrosine protein kinases specific active-site signature. 386 398 IPR008266 GO:0004672|GO:0006468
Vian4g00381 550 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 340 550 - -
Vian4g00381 550 SUPERFAMILY Protein kinase-like (PK-like) 237 542 IPR011009 -
Vian4g00381 550 Gene3D Transferase(Phosphotransferase) domain 1 340 549 - -
Vian4g00381 550 Gene3D Phosphorylase Kinase; domain 1 241 339 - -
Vian4g00381 550 SMART tyrkin_6 273 541 IPR020635 GO:0004713|GO:0006468
Vian4g00381 550 ProSiteProfiles Protein kinase domain profile. 264 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00381 Vian-Chr4 4317228 4327024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00381 81 547 Receptor kinase-like Gene Family AT1G52310 62.994 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Vian4g00381 PK_Tyr_Ser-Thr 7.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00381 - - vra:106762676 704.131