Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00379 ATGGGGGTGAAGAAGCTTAGTCAGGGAGTGAAAAACGAGGGTAATGGCAGCAACGACAACGTTTTTGCTTCATGCTCCTTCTCCAGCCTTGGCCTTGATTCCAATTTGTGTGAACAACTTCATGAGAGGTTGGGGTTCGAAGTTCCGACGCTGGTACAAGCTCAAGCGATTCCTGTTATTCTCTCTGGGCGTCATGCACTGGTGAATGCTGCAACGGGCACGGGGAAGACTGCTGCGTATCTTGCTCCGATTGTTCATCTCTTGCAGGGTTACGAAAATCGGATTCAGCGCTCTGATGGAACATTTGGATATATTATGGGTGGAGAAAATAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGGCGTCTTCTAGATCACTTGAAGAACACAACATCATTCTTGCACTTAAATCTGCGCTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGAAAAGATATAGAGGAAATACTAGATCTTTTAGGTTCAAGGAAAACAATGCATGATGACCCAAAGAATACAGTTACAAGAAACTCTAAAATTCAAAGACAGAATTTGCTTTTATCTGCCACCTTAAACGAGAAAGTGAACCACCTTGCTAAAATTAGTCTAGACAATCCAGTGATGGTTGGTCTTGATGATAAGAAAATAGCACAAATTTCAACAGCTGTAAGCAATGACCATTCAGAATCTGATGGAGATAATGAAGACCAGTATTCCAGTAAAATGCCAACAGTTGGAGATTACAAAGTTCCTGTACAGTTGATTCAGAGATACATGAAAGTGCCTTGCGGTTCACGACTACCTGTACTTCTTTCAATTATAAAGCATCTCTTTGAAAGGGAACCTTCGCAAAAGGAGGACCGGAGAACCAGTTTTCAGACCTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCTAGTGATGTTTCTGCTAGAGGCCTGGATTTTCCAAAGGTTAGATGCATCATACAATATGATTCTCCTGGAGAAGCTACGGAATATGTTCATAGGGTTGGTAGAACTGCCCGACTGGGTGAAAAAGGAGAGTCGTTGCTATTTCTGCAACCAGTTGAGATAGACTATTTACAGGACTTGGAAAAACATGGTGTCTCACTCACAGAGTATCCTATCCTCAAAGTGTTGGATAGTTTTCCACTATATGGACAAAAGAACTACACAAAGAAATCAGTGTTCTTAGATTCACATCCCTGGGTCCTTTGTCTCCAGAAGGCACTTGAAGCTTTCATCATGTCGAAGGCCGAGGTAGATAAACTTGCTAAGAAAGCATTTTGCTCTTGGGTTCGTGCATACACAGCACATCGTGGTGAGTTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTAGCAAAAAGCTTTGCATTGAAACAGCAACCTTCTTTAGTTGGACAGTCATTCCAAAAGCAAGCTAAGAAGAGAAAGAGATTTGAGAGGAAAACTGGGGTGTCAAAAAAGAGAAAAGTTGGGAGTGTGACAGAACGCAGACCATGA 1557 0.4162 MGVKKLSQGVKNEGNGSNDNVFASCSFSSLGLDSNLCEQLHERLGFEVPTLVQAQAIPVILSGRHALVNAATGTGKTAAYLAPIVHLLQGYENRIQRSDGTFGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTTSFLHLNLRWIIFDEADRILELGFGKDIEEILDLLGSRKTMHDDPKNTVTRNSKIQRQNLLLSATLNEKVNHLAKISLDNPVMVGLDDKKIAQISTAVSNDHSESDGDNEDQYSSKMPTVGDYKVPVQLIQRYMKVPCGSRLPVLLSIIKHLFEREPSQKEDRRTSFQTFKTEKSALLLSSDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGEKGESLLFLQPVEIDYLQDLEKHGVSLTEYPILKVLDSFPLYGQKNYTKKSVFLDSHPWVLCLQKALEAFIMSKAEVDKLAKKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQAKKRKRFERKTGVSKKRKVGSVTERRP 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00379 518 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 54 IPR014014 GO:0003724
Vian4g00379 518 PANTHER RNA HELICASE 24 486 - -
Vian4g00379 518 Pfam Domain of unknown function (DUF4217) 422 482 IPR025313 -
Vian4g00379 518 Pfam DEAD/DEAH box helicase 51 88 IPR011545 GO:0003676|GO:0005524
Vian4g00379 518 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 151 159 IPR000629 -
Vian4g00379 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 374 IPR027417 -
Vian4g00379 518 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 248 405 IPR001650 -
Vian4g00379 518 SMART ultradead3 45 233 IPR014001 -
Vian4g00379 518 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 223 IPR014001 -
Vian4g00379 518 Gene3D - 295 510 IPR027417 -
Vian4g00379 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 223 IPR027417 -
Vian4g00379 518 CDD SF2_C_DEAD 297 367 - -
Vian4g00379 518 MobiDBLite consensus disorder prediction 484 518 - -
Vian4g00379 518 MobiDBLite consensus disorder prediction 490 504 - -
Vian4g00379 518 MobiDBLite consensus disorder prediction 236 257 - -
Vian4g00379 518 Pfam Helicase conserved C-terminal domain 298 358 IPR001650 -
Vian4g00379 518 Gene3D - 3 99 IPR027417 -
Vian4g00379 518 Gene3D - 100 226 IPR027417 -
Vian4g00379 518 SMART DUF4217_3 420 485 IPR025313 -
Vian4g00379 518 SMART helicmild6 286 358 IPR001650 -
Vian4g00379 518 Pfam DEAD/DEAH box helicase 102 211 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00379 Vian-Chr4 4305831 4313748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00379 17 390 Eukaryotic Initiation Factors Gene Family AT3G19760 25.854 1.87e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00379 K14806 - gmx:100805157 864.759