Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00367 ATGGCTTTAGCAGTTTCCTCCACTGCATTGTCAAGTCTTCCAAACAGAGAAATACGTCAAAAGGTTAATTTGGCCGAAAGAACAGGGACATGGTTGGGTTTGAGCAGAAGAACAGCTGCAAATGCAACAAAAGGAGTGTCAGCTGTGTGTGAGCCACTTCCTCCAGATAGACCATTGTGGTTCCCTGGTAGTTCACCTCCTGAGTGGCTCGATGGCAGTCTTCCCGGTGATTTCGGTTTTGATCCTCTTGGATTAGGGTCTGATCCAGAGTTGCTAAAGTGGTTCGCTCAAGCGGAACTAGTGCATGGAAGATGGGCGATGCTTGCAGTGTTTGGAATTCTGGTTCCGGAGTTGCTGGAAAGACTTGGTTACGTTGACAACTTCAACTGGTACGATGCTGGAGCGCGAGAGTACTTCACAGACCACACAACGCTGTTCGTGGCGCAAATGGGCCTGATGGGCTGGGTGGAGGGTCGAAGATGGGCCGACATGCTTAACCCAGGATGCGTTGACATTGAGCCCAAAGTGCCTCACATTACGAACCCGAAGCCCGATGTCGGGTACCCGGGTGGGCTGTGGTTTGACCCGATGGACTGGGGTCGTGGGTCACCTGAACCAGTGATGGTGTTGAGGACGAAGGAGATAAAGAATGGAAGACTTGCAATGCTGGCATTTGTAGGGTTCTGGTTTCAAGCTATTTACGTTGGAGCTGATCCCGTTGAAAATTTGATGGCTCACCTTGCTGACCCTGGCCACTGCAACGTTTTCTCGGCTTTCACGCGGTAA 786 0.5115 MALAVSSTALSSLPNREIRQKVNLAERTGTWLGLSRRTAANATKGVSAVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELVHGRWAMLAVFGILVPELLERLGYVDNFNWYDAGAREYFTDHTTLFVAQMGLMGWVEGRRWADMLNPGCVDIEPKVPHITNPKPDVGYPGGLWFDPMDWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYVGADPVENLMAHLADPGHCNVFSAFTR 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00367 261 FunFam Chlorophyll a-b binding protein, chloroplastic 67 252 - -
Vian4g00367 261 SUPERFAMILY Chlorophyll a-b binding protein 56 259 - -
Vian4g00367 261 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 260 IPR001344 GO:0009765|GO:0016020
Vian4g00367 261 Gene3D Chlorophyll a/b binding protein domain 67 252 - -
Vian4g00367 261 Pfam Chlorophyll A-B binding protein 66 232 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00367 Vian-Chr4 4109714 4110837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00367 55 260 Chloroplast and Mitochondria Gene Families AT3G61470 65.049 4.25e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00367 K08908 - gmx:100812066 488.034