Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00361 ATGATTTCAAGCTATAGAGGACAACCAAACGTCGCTTTCTCAAAAAAGCAATCCGTTTTGGAAGCAACCGCGACAAATGCACAAGAAACCAAAAAAATGGAAGGTGGGAAAAGGGGACTTGGAACCCTAAGAAAGTATCAGAAGGTGAAGTCCTCCACTTGTGCGTGTTATTGGGTTAGAATTGATAAATTCGCATCCATAAAGTGGAAGACAGTACGTTCGGTTAGTGTTTCTGGTTTTTCTCTGTATTTTATTCTGATACGTTTGAGCATTCGCCTATTAGCGTTTGGTCTAACTCGGGAAACTTTGGTCTCACTCCAAGCGTTCAGTCTGCTGGCGGTTCATCTTGATATTCCGACCGTTCGGTATAGGTCTGCTGTAAACCAATCAGGATTGTTTGGAAGAGAGAAAAACGCAGGATTGCGAATTTCTGAAACTCCGACGGTTTCAATGGCGATTAACATTTGGCATATTGAATCGGCCAACTGCATTATGCTTGGGGATGATGTTGCCTCAAATCGAGCTATTGGCTCTTACGGAGCTAGCTGTATTCAGCAACAAACTGGGAAACAAAAGCTTTCTGTTTTGACGCATTGCAATGCTGGAAGTCTAGCCACAGCTGGATATGGTACTGCTTTGGGTGTGATCTGTGCACTTCACAGTGCAGGAGTTCTAGAAAGGGCTTATTGCACTGAAACACGCCCGTTTAATCAAGGATCTAGACTTACTGCCTATGAGTTGGTGCATGAAAAAATACCAGCAACTCTTATTGCTGATTCTGCTGCAGCTGCACTAATGAAAGCAGGAAGTGTGGATGCTGTTGTTGTTGGGGCTGATCGTGTTGCATCAAATGGTGACACAGCCAACAAAATTGGAACCTACAGTGTTGCCTTGTCCGCAAAGTTTCATAATGTACCTTTTTATGTGGCTGCCCCCCTCACCTCCGTTGATCTATCACTTTCTTCTGGACAAGAAATTGTAATTGAGGAGAGGTCTCCCAAGGAATTGTTGAACGCACGTGGAGGACTTGGAGAGCAGGTTGCTGCATCGGGAATTTCTGTGTGGAACCCAGCTTTCGATGTTACTCCTGCTAGTCTAATATCTGGGATCATCACGGAGAAGGGTGTCATTACGAAGACTTCTGCTGATGATGCATTCGACATCAAAGCTTTCGTACAGAAAACTGGTTAA 1191 0.4425 MISSYRGQPNVAFSKKQSVLEATATNAQETKKMEGGKRGLGTLRKYQKVKSSTCACYWVRIDKFASIKWKTVRSVSVSGFSLYFILIRLSIRLLAFGLTRETLVSLQAFSLLAVHLDIPTVRYRSAVNQSGLFGREKNAGLRISETPTVSMAINIWHIESANCIMLGDDVASNRAIGSYGASCIQQQTGKQKLSVLTHCNAGSLATAGYGTALGVICALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPATLIADSAAAALMKAGSVDAVVVGADRVASNGDTANKIGTYSVALSAKFHNVPFYVAAPLTSVDLSLSSGQEIVIEERSPKELLNARGGLGEQVAASGISVWNPAFDVTPASLISGIITEKGVITKTSADDAFDIKAFVQKTG 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00361 396 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 162 393 - -
Vian4g00361 396 Gene3D - 226 391 IPR042529 -
Vian4g00361 396 Gene3D - 113 225 IPR027363 -
Vian4g00361 396 SUPERFAMILY NagB/RpiA/CoA transferase-like 147 381 IPR037171 -
Vian4g00361 396 Pfam Initiation factor 2 subunit family 165 378 IPR000649 GO:0044237
Vian4g00361 396 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 159 379 IPR005251 -
Vian4g00361 396 FunFam Methylthioribose-1-phosphate isomerase 191 389 - -
Vian4g00361 396 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 163 379 IPR011559 GO:0044249
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00361 Vian-Chr4 4055980 4062440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00361 107 394 Eukaryotic Initiation Factors Gene Family AT2G05830 67.474 5.72e-130 375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00361 4 4055980 4062440 Vian4g00361 4 4055980 4062440 ECH