Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00344 ATGATGAATGGGAGGAACAGGTTTCCCTTCACCCCATCACAGTGGCAAGAGCTTGAACATCAAGCTCTCATCTACAAGTACATGGCTTCGGGAATTTCCATTCCACCTGATCTTCTCTTCACAATAAAAAGGAGCTACTTTGATTCCCCTCTGTCATCAAGGCTTTTGCCTAACCAGCCACAGCACTTTGGATGGAACTACCTGCAGATGGGTCTGGGGAGAAAGATAGACCCTGAGCCTGGTAGGTGTAGAAGAACTGATGGTAAGAAATGGAGATGCTCCAAAGAGGCATACCCGGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCATCAACAAACACAAATGCTTCAACTCAACAACCAATCTCATCTATCACCAAACTCAATACTCTTTCTCCTCTTGCATCATCTGAATCACACCAACACCACCCTCCACACTATACCTCCTTTCTCTATCACCACCCTCCATCGTCAAGGTCCTTTGAAGACAACAGTGCTCCCTTGTTTCTTGACACTGGCTCTTGCTCTCAGTCCAACGCAGATTGCAGGAGTAGGTATGCATACGGAGAGAAGGAAGAGGTGGATGAGCACGCTTTCTTCACAGAGCCGTGTGGTATAATGAAAAGCTTTTCTGCTTCCTCTATGGATGATTCTTGGCAACTCACACCATTGGCCATGAGCTCCTCTTCTTCTTCCACCAAACAGAGGAGTTCCTTTGGCTTGTCCAATGATTATTCTTGCCTGCAACTTCAGAGCCACTCAAAGCAGCACGAGCAACAAGATCAGGGTGGTTGCTACATGCTAGGTGGAGGCCAACTTGGAAAAGAAGAGCCTCAGAAAACCGTTCATCGCTTCTTTGATGAATGGCCCCACAAAGGTAGACAAGGATCTTGGCTCGATTTGGATGACAAATCTTCCACAACCCAACTTTCAATTTCCATTCCCACCTCTTCTCACGATTTTCCAGCCTTCAGTTCCAGAACCCACCATGGTAATTGCTGA 1050 0.4638 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRSYFDSPLSSRLLPNQPQHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPSTNTNASTQQPISSITKLNTLSPLASSESHQHHPPHYTSFLYHHPPSSRSFEDNSAPLFLDTGSCSQSNADCRSRYAYGEKEEVDEHAFFTEPCGIMKSFSASSMDDSWQLTPLAMSSSSSSTKQRSSFGLSNDYSCLQLQSHSKQHEQQDQGGCYMLGGGQLGKEEPQKTVHRFFDEWPHKGRQGSWLDLDDKSSTTQLSISIPTSSHDFPAFSSRTHHGNC 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00344 349 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vian4g00344 349 PANTHER GROWTH-REGULATING FACTOR 5 8 336 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vian4g00344 349 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vian4g00344 349 Pfam WRC 78 120 IPR014977 -
Vian4g00344 349 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Vian4g00344 349 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vian4g00344 349 MobiDBLite consensus disorder prediction 120 138 - -
Vian4g00344 349 MobiDBLite consensus disorder prediction 108 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00344 Vian-Chr4 3845909 3847182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00344 7 120 GRF Transcription Factor Family AT3G13960 71.053 2.40e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vian4g00344 WRC 7.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00344 - - vun:114162468 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00344 4 3845909 3847182 Vian4g00344 4 3845909 3847182 ECH
Vian1g00509 1 4838259 4840741 Vian4g00344 4 3845909 3847182 PCT