Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00342 ATGGAACCGAAGAACTGTTGTGAAAAAGAAGGAGCATGGTCTTCTGATGAAGACCAAATCCTCTTGAAGTATGTTGAACTCACTGGAGAAGGAAATTGGACAGACCTTCCCGAAAGAGCTGGGTTGAAAAGATGTGGTGAGAGTTGCAAACATCGATGGCTGAACTATCTCAAGCCAACCATCCCCAGAGACAACTTTCTTTGGGATGAACAGGAACTCATCATCAGACTGCATAAACTCTTGGGGAATAGATGGTCAATGATTGCAGGAAGATTACCAGGACGCAGTGAAGACGAGATAAAGAAGTACTGGAATACGTATTTGAGCAAGAAGGTAGAAGAAAAGAAGAAGGTTGTGAGAAGTAGTAGCATGTCTAGTGTTGAATCTCCATGGTTGTCTGAGAATGAGCATGCTATGAATTCCATGGAGTCTCCAAAGCCTGTGATAGTTAGACCTAAAGTTGTTAGGTTAACCAAGCCTGTGGTGGCAAGACTGGTAGGTGCCTAA 507 0.4339 MEPKNCCEKEGAWSSDEDQILLKYVELTGEGNWTDLPERAGLKRCGESCKHRWLNYLKPTIPRDNFLWDEQELIIRLHKLLGNRWSMIAGRLPGRSEDEIKKYWNTYLSKKVEEKKKVVRSSSMSSVESPWLSENEHAMNSMESPKPVIVRPKVVRLTKPVVARLVGA 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00342 168 CDD SANT 12 57 IPR001005 -
Vian4g00342 168 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Vian4g00342 168 SMART sant 62 110 IPR001005 -
Vian4g00342 168 SMART sant 9 59 IPR001005 -
Vian4g00342 168 CDD SANT 69 108 IPR001005 -
Vian4g00342 168 Gene3D - 10 62 - -
Vian4g00342 168 SUPERFAMILY Homeodomain-like 10 104 IPR009057 -
Vian4g00342 168 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Vian4g00342 168 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 57 IPR017930 -
Vian4g00342 168 Gene3D - 66 130 - -
Vian4g00342 168 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 130 - -
Vian4g00342 168 FunFam MYB-related transcription factor 9 62 - -
Vian4g00342 168 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Vian4g00342 168 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Vian4g00342 168 Pfam Myb-like DNA-binding domain 65 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00342 Vian-Chr4 3787970 3789094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00342 9 130 MYB Transcription Factor Family AT5G40330 51.639 1.42e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian4g00342 Myb_DNA-binding 4.1e-14 CL0123