Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00338 ATGCATAAGCATGCTAAGTTTGAGCGTTCTGTACTAGCATTTTCAAGACCAGACACGTCAACACCAACGTTTGCAGCGATTCGCGTTTGCGGACCTGTTCTCTCCCCTACAGTCGACAACGCCTGCGGCGGACCATCGTATAGGGAAACGATGGATTTTGTGACGGTGAGGCACATTGGTGGTCTAGATGCCCAGATACAGGAAATTAAAGAAGCAGTTGAGCTTCCATTGACACATCCTGAACTGTATGAAGACATTGGTATCAAGCCTCCTAAGGGAGTCATTTTATATGGAGAACTTGGAACTGGGAAGACATTACTTGCAAAGTTGAGTTTGTTCGGGAAATCCACAATTGGAGGGAGAATGTCAGTGAATCTCACCGAAAACGCGATTCCGGCGATAATTAATGGCGACGTCGACGCCAAACCGCTTGTTCAGGTTTTGGACGTTACCTTAGTCTCCAACAGCAACAACTCGCAGCAGCAGAAATACCGTCTCCTGATTTCCGACGCCGTTTCGTCTCACCACGCGATGCTCGCCACTCAGCTCAACGACCGAATCCGAACCGGTCGAGTTCGGAAGGGTTCGGTTGTTCAGCTTCTCGATTATATATGCACTCCTTTCAAGAACCGCAAGATTATTATGGTTCTAAACATGGAAACTATAATAGCTGATTTTGAGATCATTGGGAATCCGAAACCACCCTTGGATTCAGATTTACCAGGTGTGAGGGCTATAGCAGATAACACTGTGGAGAGTTTGGCCAGGAGTAATAATACTAGTAATACTATTAGTAACTCTGCTGCTCAAAATGCAAGTCATGATAAAGCCCAGAATTTCAGGCCAACAATTCAACCTCCATACCAACCGCCTCCTGTTTACAAAGGCCGTGGTGCAGTTATGAAAAATGAGGCGCCAGCACGCATCATTCCTATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCTATCAAGGCAAGGGTAACTGCTAAAGGTGATCTGCGCCGCTACAATAATGCACGTGGTGATGGGAAAGTCTTCTCATTTGATCTCCTGGATTCTGATGGAGGTGAAATACGAGTAACATGCTTTAATGCTGTTGTTGATCGATTCTATAGTGTAATTGAGGTTGGTAAAGTTTACATGATATCGAAAGGTAGCTTAAAACCTGCACAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTTTTTTGGAATCAACTTCAACAGTAGAGTTGTGCCCGGATGAAGATGATTCTATACCTAGACAGCAGTTCTCATTCCGACCTATCAGTGACATTGAGAATGTTGACAATAACTCCATCCTTGATGTTATTGGGGTTGTGACATCTGTGAACCCTTCTGTTCCCATCTTGAGGAAGAATGGAATGGAAACCCAGAGAAGAGTTTTGAGTCTAAAAGACACTTCTGGCAAGAGTGTTGAACTTACCCTGTGGGGAGAATTTTGCAATAGGGAAGGGCAACAGTTGCAAGAGATGGTAGATTCTGGGTTTTTCCCTATTTTAGCTGTCAAAGCAGGGAAGGTGAATGATTTTAGTGGAAAGTCGATAGGCTCTATTTCTACCACACAGCTTTTCATAAATCCTGAGTTCCCTGAGGCCAATAGCTTAAGACAATGGTTTGATCTAGTTGGAAAAGATTCTGCTTCCCTTTCAATTTCTAGGGACGTTATTCCTGGAGGAACGAAGAATGAGGTTCGTAAAACTGTATCTCAAATCAAGGATGAAGGTTTGGGACGATCAGACAAGCCAGACTGGATAACAATAAGGGCAACCATAGCATTCATCAAGACTGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGACAATGCAATAAAAAGGTGACTAGGTCAGGAAACACAAGATGGCAATGTGATAGATGCAATCAAGAATTTGAGGAGTGTGATTACCGATACCTTCTCCAAGCTCAAATTCTGGATGGCACAGGATTAACTTGGGTAACTGCTTTTCAGGAAGCAGGTGAAGAGATTATGGAGTATTCAGCGAAAGATCTGTACTTGTTGAAGCATGAACAACAGGATGATGAGAGGTTTGCAGAAGTACTCAAGAGCCGACTCTTCAAACAGTTTATGTTTAGGCTGAAAATCAAAGAGGAATTATATGGCGATGAACAGAAGGTCAAGATTACTGTAGTTAAGGTAGATAAGGTGAATTATTCTTCAGAGAGTCAATACATGCTTGATTCGATTTCCAAGTTTTGTAGGAAGTGA 2268 0.4295 MHKHAKFERSVLAFSRPDTSTPTFAAIRVCGPVLSPTVDNACGGPSYRETMDFVTVRHIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGELGTGKTLLAKLSLFGKSTIGGRMSVNLTENAIPAIINGDVDAKPLVQVLDVTLVSNSNNSQQQKYRLLISDAVSSHHAMLATQLNDRIRTGRVRKGSVVQLLDYICTPFKNRKIIMVLNMETIIADFEIIGNPKPPLDSDLPGVRAIADNTVESLARSNNTSNTISNSAAQNASHDKAQNFRPTIQPPYQPPPVYKGRGAVMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYSVIEVGKVYMISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDDSIPRQQFSFRPISDIENVDNNSILDVIGVVTSVNPSVPILRKNGMETQRRVLSLKDTSGKSVELTLWGEFCNREGQQLQEMVDSGFFPILAVKAGKVNDFSGKSIGSISTTQLFINPEFPEANSLRQWFDLVGKDSASLSISRDVIPGGTKNEVRKTVSQIKDEGLGRSDKPDWITIRATIAFIKTDTFCYTACPLMIGDRQCNKKVTRSGNTRWQCDRCNQEFEECDYRYLLQAQILDGTGLTWVTAFQEAGEEIMEYSAKDLYLLKHEQQDDERFAEVLKSRLFKQFMFRLKIKEELYGDEQKVKITVVKVDKVNYSSESQYMLDSISKFCRK 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00338 755 Gene3D - 564 753 IPR012340 -
Vian4g00338 755 Gene3D - 124 235 IPR012340 -
Vian4g00338 755 PANTHER REPLICATION FACTOR A 1, RFA1 322 730 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vian4g00338 755 FunFam Replication protein A subunit 125 235 - -
Vian4g00338 755 Gene3D - 421 558 IPR012340 -
Vian4g00338 755 SUPERFAMILY Nucleic acid-binding proteins 308 422 IPR012340 -
Vian4g00338 755 SUPERFAMILY Nucleic acid-binding proteins 122 231 IPR012340 -
Vian4g00338 755 CDD RPA1_DBD_A 311 414 - -
Vian4g00338 755 FunFam Cell division control protein 48 homolog E 56 128 - -
Vian4g00338 755 SUPERFAMILY Nucleic acid-binding proteins 575 752 IPR012340 -
Vian4g00338 755 CDD RPA1N 130 223 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vian4g00338 755 Coils Coil 754 755 - -
Vian4g00338 755 CDD RPA1_DBD_B 443 550 - -
Vian4g00338 755 NCBIfam replication factor-a protein 1 (rpa1) 125 751 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vian4g00338 755 SUPERFAMILY Nucleic acid-binding proteins 426 553 IPR012340 -
Vian4g00338 755 CDD RPA1_DBD_C 578 751 IPR047192 -
Vian4g00338 755 Pfam Replication factor-A C terminal domain 594 745 IPR013955 -
Vian4g00338 755 Gene3D - 55 109 IPR027417 -
Vian4g00338 755 FunFam Replication protein A subunit 421 559 - -
Vian4g00338 755 Pfam Replication protein A OB domain 432 536 IPR031657 -
Vian4g00338 755 FunFam Replication protein A subunit 308 417 - -
Vian4g00338 755 FunFam Replication protein A subunit 560 752 - -
Vian4g00338 755 Pfam Replication factor-A protein 1, N-terminal domain 126 222 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vian4g00338 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 110 IPR027417 -
Vian4g00338 755 Gene3D - 308 418 IPR012340 -
Vian4g00338 755 Pfam OB-fold nucleic acid binding domain 323 406 IPR004365 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00338 Vian-Chr4 3749870 3758208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00338 147 747 Core DNA Replication Machinery Family AT2G06510 69.692 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00338 K07466 - gmx:100792409 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00338 4 3749870 3758208 Vian4g00338 4 3749870 3758208 ECH