Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00336 ATGGAAGAAGAAGGAGACGTGGCAGACAAGAAAAAGACAAAGAACGAGGTGGTTCTACGAATTTCAGACACTGAAGAAGCCATTAATACAAAGGAGCAAAGGGTTTCCAGAAGCTTCCCAGTAGCTGAAAACAGTTCCCTTTCTCCTCAGCATAATACTCAGATAGGTAAAGGGTTTAGAGATTCTCATGGTGAAATCACAGAGTGCAATGGTCAAGTATCCGCAGAGTTGGTGACAACTACAAAGAGGTTGATGGGTCGGTCGGAGTTTTCAAAACCAAAGTCCAGAATGGTGGAACCAACGTGTCCAAAAGATGCAAACTTTGTCGAAGAAAAGGCTCAAAAGACAAGTTCACCTGCAAGGAATTCTCCTAACAAGAATGTTCCTGACGCTACTGTTGTCACCCCAAGAAGCCCCTTCCTTGGGACACCAGGGGAAGAAGAAGATGATGACGAAGAAGTGTACAAGACTGCAAATGTTGAAGTGAGCAAGAGATCTGGTAAGAAGTGGAGAGTTGTAGAGTTGTTTGCTTTTGCTTGCATCGTGGGGTTTTTTGTTGCATGCTTGACTGTGAATGAATTGAAAAAAAGGTTGATTTGGGGATTGGAACTGTGGAAATGGTGTGTATTGGCTTTGGTTGTCCTCTGTGGTAGACTGGTCACTGAGTGGTTTATCAATATTTTGGTTTTCTTGATTGAGAGGAACTTTTTGTTTAAGAAGAAGGTTTTGTATTTTGTCTATGGTGTGAAGAAGAGTGTTCAGGGCTTTATATGGCTAAGTTTGGTTCTTCTGACATGGGGACTGCTTTTCAACCATGGAGTGGAGAGAACCAGAAAGGTTACTAAGATTCTTAATTACATTACTAGGGCCCTTGCTTCTTGTCTTCTTGGAGCAGCTATATGGTTGGTCAAAACATTGTTGATAAAACTTTTAGCTTCAAAATTTCAATCTACTAGATTTTTTGACAGGGTGCAAGAATCAATCTTTCATCAATACATTCTCAAGACTCTTTCAGGTCCTCCCTTGAGGGAGGTGGCTGAAAATGTAGGTTGGATTTCAAATAGTCAGCAACTCAGTTTTAAGACCATGAATAATGAGAATGAAGGGGAGAAAGAACAAGTCATTGATGTAGACAAGCTCAAGAAAATGAAACCAGAAAAAGTTTCTGCTTGGACTATGAAAGGTTTGATTAATGTGATAAAGAGTTCTGGGTTGTCTACCATCTCCTATGCACCAGACGAAGATCAGAATGACCAGAAAGATAATGAAATTAATAGCGAGTGGGAAGCAAAGGCAGCTGCATACAGAATTTTCGGGAACGTAGCCAAGCCAGGACACATTTATATTGATAAGGATGACCTCTTGCGATTCATGAAAAATGAAGAAGTGGAAAACGTGCTTCCACTATTTGAAGGTGCAGTTGAGACTAGAAGAATTAAGAGGAAGTCTCTCAAGAACTGGCTGGTAAAAGTCTACTTTGAACGCCGGTCGCTCGTACATTCACTAAATGATACCAACACAGCTGTTGATGACTTGAATATGCTTGCTTCTTTCCTTGTGCTTATTGTGATCCTTATTGTGTGGCTTCTTATAATGGGCTTCTTGACAACTGAAGTTCTTGTCTTTATTTCATCCCAGCTTTTACTTGTGGTTTTCATGTTTGGCAACACAGCTAAGACTGTATTTGAAGCCATTATATTTGTTTTTGTGATGCACCCTTTTGATGTTGGTGATCGTTGTGTTATTGATGGAGTTCAGATGATTGTGGAAGAGATGAACATACTAACTACCGTCTTTCTGAGATATGACAATGAAAAGATTTTCTATCCAAATTCGGTTCTGGCAACCAAGCCAATCGGGAACTTCTACAGGAGTCCAGAAATGAGTGATTCTGTTGAATTTGTTGTTGATGTTTCTACTTCTGTTGAAAGTATTGGAGCTTTGAAGGCAAAGTTAAAAGTATATTTGGAGAGTAGACCTCAACATTGGCGTCCCAATCACAATGTAGTGGTTAAGGATATTGAGAATGTGAATAAGTTGAAAATGGCTGTATATGTTACTCACACCATAAATTTTCAAAACTACGGGGAGAAGAACAACCGAAGATCCGAATTAGTCCTGGAGTTAAAGAAAATTTTTGAAGATCTTAATATTAAATATCATCTGCTCCCACAAGAAGTTCATCTCAGTTATTTTGAGATCACAGGTGGTGTGACAAATTTCATGATAAGAAGTGAAATTGGTTTGAACACTGTATTTCCTAATGAATTAGCTGAGGCCAGGGAAGAAAGAAGGGAAGAAAGAAAGATGATGGTCAATGGCATTGTTCTGAGGAAGATCACTCCAAGGGCTCTTGCTTAA 2361 0.3952 MEEEGDVADKKKTKNEVVLRISDTEEAINTKEQRVSRSFPVAENSSLSPQHNTQIGKGFRDSHGEITECNGQVSAELVTTTKRLMGRSEFSKPKSRMVEPTCPKDANFVEEKAQKTSSPARNSPNKNVPDATVVTPRSPFLGTPGEEEDDDEEVYKTANVEVSKRSGKKWRVVELFAFACIVGFFVACLTVNELKKRLIWGLELWKWCVLALVVLCGRLVTEWFINILVFLIERNFLFKKKVLYFVYGVKKSVQGFIWLSLVLLTWGLLFNHGVERTRKVTKILNYITRALASCLLGAAIWLVKTLLIKLLASKFQSTRFFDRVQESIFHQYILKTLSGPPLREVAENVGWISNSQQLSFKTMNNENEGEKEQVIDVDKLKKMKPEKVSAWTMKGLINVIKSSGLSTISYAPDEDQNDQKDNEINSEWEAKAAAYRIFGNVAKPGHIYIDKDDLLRFMKNEEVENVLPLFEGAVETRRIKRKSLKNWLVKVYFERRSLVHSLNDTNTAVDDLNMLASFLVLIVILIVWLLIMGFLTTEVLVFISSQLLLVVFMFGNTAKTVFEAIIFVFVMHPFDVGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIFYPNSVLATKPIGNFYRSPEMSDSVEFVVDVSTSVESIGALKAKLKVYLESRPQHWRPNHNVVVKDIENVNKLKMAVYVTHTINFQNYGEKNNRRSELVLELKKIFEDLNIKYHLLPQEVHLSYFEITGGVTNFMIRSEIGLNTVFPNELAEAREERREERKMMVNGIVLRKITPRALA 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00336 786 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 8 730 IPR016688 -
Vian4g00336 786 FunFam Predicted mechanosensitive ion channel 573 622 - -
Vian4g00336 786 SUPERFAMILY Sm-like ribonucleoproteins 563 622 IPR010920 -
Vian4g00336 786 MobiDBLite consensus disorder prediction 29 64 - -
Vian4g00336 786 PIRSF Memb_At2g17000 2 742 IPR016688 -
Vian4g00336 786 Gene3D - 573 622 IPR023408 -
Vian4g00336 786 MobiDBLite consensus disorder prediction 111 151 - -
Vian4g00336 786 MobiDBLite consensus disorder prediction 33 57 - -
Vian4g00336 786 MobiDBLite consensus disorder prediction 112 132 - -
Vian4g00336 786 Pfam Mechanosensitive ion channel 515 719 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00336 Vian-Chr4 3742499 3745752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00336 80 730 Mechanosensitive Ion Channel Family AT5G12080 52.941 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00336 K22048 - gmx:100777332 1170.61