Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00334 ATGGGTGATGTTCTAAGCCCTTTCACAGTTTCATCTCCTCCTCCACCCTCTTCCTCTTCCGACAACAACAGCATGCCCATGTTGTACTACGGTCTTGTGGTGGTGGGAACCGCCGCCATAGTGCTGGCCGTGTACAACGTCTTCCTCCTGAAACGCAGCCACTCGCGGTCGCAGCCTCCGGGGTCGAGTCCCAATGGTGTGGGAACAACAATTGAAGGGGTTTCGGAGATAACGAGGAGCTTGGAGAACCGACAGAGACAGTTGCTGTCGAGCTTCAAGTACAAGAGAGAAGAGGTGGCAAAAGAAAAAGAAGAGTTGGAAGATTTTGAGTGCCCCGTTTGCTTATCGGTTTACGAGGAAGGAGAAGAAGTGAGGAAGCTTCCACAGTGCAAACACTATTTCCACGTTCTTTGCATAGACATGTGGCTCTATTCTCACTTCGATTGCCCCATTTGTAGAACACCCGTTGTCGTCGGCCACCTCTCTCCGATCGATGCCTTCATTGAATCCGGCGGCATCTCGTAG 525 0.5162 MGDVLSPFTVSSPPPPSSSSDNNSMPMLYYGLVVVGTAAIVLAVYNVFLLKRSHSRSQPPGSSPNGVGTTIEGVSEITRSLENRQRQLLSSFKYKREEVAKEKEELEDFECPVCLSVYEEGEEVRKLPQCKHYFHVLCIDMWLYSHFDCPICRTPVVVGHLSPIDAFIESGGIS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00334 174 CDD RING-H2_EL5-like 110 153 - -
Vian4g00334 174 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Vian4g00334 174 SUPERFAMILY RING/U-box 101 158 - -
Vian4g00334 174 FunFam RING-H2 finger protein ATL1 69 158 - -
Vian4g00334 174 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 18 157 IPR044675 -
Vian4g00334 174 Pfam Ring finger domain 110 153 IPR001841 -
Vian4g00334 174 SMART ring_2 111 152 IPR001841 -
Vian4g00334 174 MobiDBLite consensus disorder prediction 1 23 - -
Vian4g00334 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 158 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00334 Vian-Chr4 3718618 3719142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00334 16 156 C3H Transcription Factor Family AT1G04360 30.128 1.94e-20 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00334 - - aprc:113852327 217.624