Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00332 ATGCTCACGTGCATAGCACGTTCCAAGAAACTCGACTCGGCGAGCGACGATCCGAGTTCGCGGGGCGCCAAATCGCTAACGTGTCAGCTGAAGGAGATGGCACTGAAGGCTTCGGGATCGTACAAGCAGTGCGGTCCGTGCGCGCCGCCGCAGAGTCGACTGAGTCGCGGTGGCGAGTCCGATTCGGAGTCGTCGCGGCGGCGGTGGGGGAAGGAGATGGAGGCTCGGTTGAAGGGGATTTCGAGCGGCGAGGGGACGCCGAGCTCCAGTGGGAGGAGAATGGTGGTGGTGCTGGAAGAGGAGGCGGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATCACGTTCGTATCGCTTCCGCGTGGCGGGAACCATCTCAAACGGATTCGGTTCAGTCGCGATATATTTAACAAATGGCAAGCTCAGAGATGGTGGGCAGAGAATTACGACAAGGTGATGGAACTTTACAATGTTCAAAGGCTTAACCGGCAAGCTATCCCTCTTCCAACTCCACCAAGGTCTGAAGACGAGAGCTCGAAGCGTGAATCAATAGAAGAGATCCCTGTGACACCTCCGCTGAGCAGGGAAAGGCCACCGTGTAATATATTCCGTGGAGGAGGAGGAGGGGTGGCAATGGGGTACTCATCCTCTGATTCGTTCGATCAGCATTCATTGCAATCCCGGCATTACTATGATCCGAGTGGTGTGAACTCAACCCCGAAGGTGTCGACCATTAGTGCTGCTGCGAAGACAGATATCTCATCATCAATGGATGCTGATGCTTCTATCAGAAGTAGCTCATCTAGGGAAGCTGATCGCTCCGGCGATTTATCAATCAGTAATGCCAGTGACCTCGATGCTGAATGGGTCGAGCAGGATGAACCTGGGGTTTACATTACCATCAGAGCTCTCCCTGGTGGCAAAAGGGAGCTCAGACGAGTAAGGTTCAGTCGAGAAAAGTTTGGGGAGGTGTATGCTAGACTGTGGTGGGAAGAGAACCGTGCCAGAATACATGAACAGTACTTGTGA 1038 0.5453 MLTCIARSKKLDSASDDPSSRGAKSLTCQLKEMALKASGSYKQCGPCAPPQSRLSRGGESDSESSRRRWGKEMEARLKGISSGEGTPSSSGRRMVVVLEEEAEPKEWVAQVEPGVLITFVSLPRGGNHLKRIRFSRDIFNKWQAQRWWAENYDKVMELYNVQRLNRQAIPLPTPPRSEDESSKRESIEEIPVTPPLSRERPPCNIFRGGGGGVAMGYSSSDSFDQHSLQSRHYYDPSGVNSTPKVSTISAAAKTDISSSMDADASIRSSSSREADRSGDLSISNASDLDAEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEVYARLWWEENRARIHEQYL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00332 345 MobiDBLite consensus disorder prediction 59 78 - -
Vian4g00332 345 Pfam Transcription factor regulating root and shoot growth via Pin3 105 159 IPR013591 -
Vian4g00332 345 Pfam Transcription factor regulating root and shoot growth via Pin3 290 344 IPR013591 -
Vian4g00332 345 ProSiteProfiles BRX domain profile. 105 160 IPR013591 -
Vian4g00332 345 MobiDBLite consensus disorder prediction 39 91 - -
Vian4g00332 345 MobiDBLite consensus disorder prediction 170 203 - -
Vian4g00332 345 Pfam Transcription factor BRX N-terminal domain 24 47 IPR027988 -
Vian4g00332 345 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 345 IPR044532 -
Vian4g00332 345 ProSiteProfiles BRX domain profile. 290 345 IPR013591 -
Vian4g00332 345 MobiDBLite consensus disorder prediction 257 282 - -
Vian4g00332 345 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00332 Vian-Chr4 3686931 3691200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00332 1 345 Major Intrinsic Protein MIP AT1G31880 42.636 6.09e-83 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00332 - - pvu:PHAVU_009G229100g 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00332 4 3686931 3691200 Vian4g00332 4 3686931 3691200 ECH
Vian1g00520 1 4931184 4936384 Vian4g00332 4 3686931 3691200 PCT