Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00331 ATGGACAGTGGTGGCCACTACAACCCCCGCACCGTCGAAGAGGTTTTCCGGGACTTCAAGGGCCGCAGGGCTGGCATGATCAAAGCCCTTACCACTGATGTTGAGGAGTTTTACCAGCAGTGCGATCCTGAAAAGGAGAACCTATGTCTATATGGATTCCCCAATGAACAATGGGAAGTTAATTTGCCAGCTGAAGAAGTTCCTCCAGAACTTCCCGAACCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGTTATCTTTAGTTGCTGTTCACAGTGATGCATGGCTACAGTCCGTGGCTTTCTACTTTGGAGCGAGATTTGGTTTTGATAAAGCTGACAGGAAACGCCTATTCACTATGATTAATGATCTGCCTACTATATTCGAGGTCGTAACTGGATCTGCAATGAAACAGGCCAAGGAGAAGTCATCAGACCGCAACAGCAGCAAATCAAAGTCCGGTTCAAAACGAGCATCTGAATCTGTGAAGTATGTAAAACAAGAAGTGAAGGAGGAGGAGGTATTGGACGAAGAAGTAGACGAGGAACACGGAGAGACCTTGTGTGGCGCTTGTGGGGAGAACTACGCATCCGATGAGTTCTGGATTTGTTGCGACATATGCGAGAAGTGGTTTCATGGGAAGTGTGTGAAAATCACTCCTGCCCGGGCCGAGCACATCAAACACTACAAGTGCCCCTCATGCAGCAACAAGAGAGCAAAACCTTGA 744 0.4785 MDSGGHYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLQSVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGSAMKQAKEKSSDRNSSKSKSGSKRASESVKYVKQEVKEEEVLDEEVDEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKHYKCPSCSNKRAKP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00331 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 242 IPR013083 -
Vian4g00331 247 SMART PHD_3 193 241 IPR001965 -
Vian4g00331 247 ProSitePatterns Zinc finger PHD-type signature. 194 240 IPR019786 -
Vian4g00331 247 CDD PHD_AL_plant 193 243 IPR044104 -
Vian4g00331 247 PANTHER CPG BINDING PROTEIN 8 246 IPR045104 GO:0006355|GO:0042393
Vian4g00331 247 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Vian4g00331 247 MobiDBLite consensus disorder prediction 144 170 - -
Vian4g00331 247 Pfam PHD-finger 194 243 IPR019787 -
Vian4g00331 247 MobiDBLite consensus disorder prediction 145 170 - -
Vian4g00331 247 FunFam PHD finger alfin-like protein 186 242 - -
Vian4g00331 247 SUPERFAMILY FYVE/PHD zinc finger 186 245 IPR011011 -
Vian4g00331 247 ProSiteProfiles Zinc finger PHD-type profile. 191 243 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00331 Vian-Chr4 3666947 3681687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00331 7 246 Alfin-like Transcription Factor Family AT3G42790 74.380 2.10e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vian4g00331 Alfin 8.1e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00331 K26274 - gmx:100170699 438.343