Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00324 ATGGAGGAAATAACTTCGACGGTTGCAGTGCCATTCTCACTTGGGAATTTAATACAAAAAGATCCATCAGTGACAACCCACATGGAGATAACTGGCCTAAAGCTCAGGGCAAACACTGCACCAGTATTAATATTAAATCCTGCAATTGAAAGTGAAAATCACACAGATAGTGGTCCTCAACCCCAAATTAAAGTGTCTTCAGAAGCAAAGAACAACCAGGTTGGAGCTGACCTTGTCTCAGAAATGGTAAGTCAAGGAAACAATAATTGTTTCCATGCTGAAAACCTAAAGCAGGCAAGAAAAGAAAACCAATCATTGTTGGCTAAGGATTTTAAGTGTGAGCCTATCTCTCAATCGGCTCCTGCTGACAAAACTAGTCCTTGTAGGGAGGAATCTTCTGTTTCTGTGGCTAATTGTTGTGAAATAAGTTCACCTATCACCATAAAGGTTGATGATAACACAGTTCATGGAAGGGCAGGTTTGACTGAGCCGCCAGGTGCAGCTATAGAGCCACTGCAGAACATGGTTTCTGTTGCTAGGGGGCATGAGAGTGAAGATGGAAGTGGATCAGATGAGTCTGATAAAAAACCAATTTCTGTGGTTCATGAGATGCCGGAGAAGGCAACATGCTTGGAATTGAGTGGTGCCATCAGTACTACCCCACTATGGGGTTGCTCATCGGTTTGTGGAAGGAGAGAGGAGATGGAAGATGCTATTGCTGTTAGGCCTCATCTTTTTCAAGCTCCTTCAATGATGGTAATGGATGATTATCTGAGTGAAAACTCAAACTTTTCACCAGCCCACTTTTTTGGCGTGTATGATGGACATGGGGGCTGTCAGGTTGCCGATTACTGCCGGGAACATCTTCATTCAGTGTTGGTTGATGAGATAACAACTGCACAATCGAGTTTTGATGAACAGAATGGGAGAGAAAACTGGGAGAACCAATGGAAGAAGGCATTCTCCAATTGCTTTCACAAAGTAGATGATGAGGTTGGAGGGGTTGGTGAAGATAATGGAGCAAGTGTTGAACCTCTTGCTTCTGAGGCTGTTGGCTCCACTGCTGTGGTTGCCCTTTTGACTCAAACTCACATAATAGTTGCAAACTGTGGAGATTCAAGAGCTGTCTTGTGTCGCGGAAAAGAAGCAATGCCATTGTCTGATGATCACAAACCAAATAGAGAAGATGAATGGGAAAGGATAGAAGCTTCAGGAGGAAGGGTCATACAATGGAATGGGTACCGAGTTCTAGGTGTTTTGGCAGTGTCAAGATCCATAGGTGACAGGTACTTAAAACCATGGGTAATTCCAGAGCCAGAAGTGAAGTGTATCCAGAGAGACAAAAACGATGAGTGCCTCATTCTGGCCAGTGATGGATTATGGGATGTCATGACAAATGAAGAAGCCTGTGACTTTGCAAGAAGGAGAATCCTTCTTTGGCATAAGAAGAATGGCAACAACTCATCATCACAACAAGGCCAAGGACCTGACCCTGCAGCTCGGTATGCTGCAGAGTATCTATCTAGACTTGCCCTTCAAAGAGGAAGCAAAGATAACATCTCTGTCATTGTTATAGACTTGAAGCCCCAAAGAAAATTCAAGAAAAAAGAATAA 1614 0.4343 MEEITSTVAVPFSLGNLIQKDPSVTTHMEITGLKLRANTAPVLILNPAIESENHTDSGPQPQIKVSSEAKNNQVGADLVSEMVSQGNNNCFHAENLKQARKENQSLLAKDFKCEPISQSAPADKTSPCREESSVSVANCCEISSPITIKVDDNTVHGRAGLTEPPGAAIEPLQNMVSVARGHESEDGSGSDESDKKPISVVHEMPEKATCLELSGAISTTPLWGCSSVCGRREEMEDAIAVRPHLFQAPSMMVMDDYLSENSNFSPAHFFGVYDGHGGCQVADYCREHLHSVLVDEITTAQSSFDEQNGRENWENQWKKAFSNCFHKVDDEVGGVGEDNGASVEPLASEAVGSTAVVALLTQTHIIVANCGDSRAVLCRGKEAMPLSDDHKPNREDEWERIEASGGRVIQWNGYRVLGVLAVSRSIGDRYLKPWVIPEPEVKCIQRDKNDECLILASDGLWDVMTNEEACDFARRRILLWHKKNGNNSSSQQGQGPDPAARYAAEYLSRLALQRGSKDNISVIVIDLKPQRKFKKKE 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00324 537 Gene3D - 214 537 IPR036457 -
Vian4g00324 537 PANTHER PROTEIN PHOSPHATASE 181 527 IPR015655 GO:0004722|GO:0006470
Vian4g00324 537 SMART PP2C_4 212 525 IPR001932 -
Vian4g00324 537 Pfam Protein phosphatase 2C 226 520 IPR001932 -
Vian4g00324 537 ProSitePatterns PPM-type phosphatase domain signature. 269 277 IPR000222 GO:0043169
Vian4g00324 537 ProSiteProfiles PPM-type phosphatase domain profile. 222 527 IPR001932 -
Vian4g00324 537 SUPERFAMILY PP2C-like 220 529 IPR036457 -
Vian4g00324 537 CDD PP2Cc 224 527 IPR001932 -
Vian4g00324 537 FunFam Protein phosphatase 2C 16 214 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00324 Vian-Chr4 3599542 3601992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00324 56 536 PP2C-type Phosphatase Gene Family AT1G17550 45.455 1.45e-137 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00324 K14497 - gmx:100812974 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00532 1 5039394 5042030 Vian4g00324 4 3599542 3601992 PCT